1. HROM_16s_rRNA_sequences
- 16s rRNA sequence from HROM and GTDB with identical species annotation

2. HROM_kraken2_customdb
- kraken2 concatenated HROM database

3. HROM_metaphlan_customdb
- species-specific marker database from HROM

4. HROM_nonredundant_genomes
- all non-redundant genomes of HROM
- for download, used command below
- wget https://www.decodebiome.org/HROM/data/genome_catalog/HROM_nonredundant_genomes/SPECIES/CONSPECIFIC.fna
- ex) wget https://www.decodebiome.org/HROM/data/genome_catalog/HROM_nonredundant_genomes/HROM_Genome_0023/HROM_Genome_0023_1.fna

5. HROM_representative_genomes
- species-level representative genomes of HROM

6. HROM_species_pangenome
- species pangenomes from HROM

7. HROM_nonredundant_genomes.tar.gz
- all non-redundant genomes bulk download

8. HROM-Species-metadata.tsv
- Metadata of species-level genomes of HROM

9. HROM_Conspecific-genomes-metadata.tsv
- Metadata of all conspecific genomes of HROM


Present directory - data/genome_catalog

Name Last modified Size
Parent Directory--
HROM_16s_rRNA_sequences2025-01-02 22:44:21-
HROM_kraken2_customdb2024-10-03 16:21:26-
HROM_metaphlan_customdb2025-01-02 22:32:43-
HROM_nonredundant_genomes2025-06-24 17:24:21-
HROM_representative_genomes2024-10-14 20:02:33-
HROM_species_pangenome2024-09-30 18:33:07-
HROM-Species-metadata.tsv2026-02-06 11:38:141.8 MB
HROM_Conspecific-genomes-metadata.tsv2024-09-29 21:42:1822.7 MB
HROM_nonredundant_genomes.tar.gz2025-05-20 23:01:4476.1 GB
README.txt2026-02-06 11:44:12973.0 B
decontamination_HROM.tar.gz2025-08-07 15:14:2012.6 GB