1. 16S_rRNA/
16S rRNA sequences of 2,542 species

2. antismash/
antiSMASH results

3. epitopes/
Genes that contain IEDB autoimmune disease related human epitope.
column information
1) Genes
2) Epitope_ID
3) Epitope sequence
4) Alignment score (see original paper of HRGM)
5) Epitope information (IEDB accession|antigen name|antigen accession)


4. HRGM_Genome-Sequences/
Genome sequences of 5,414 HRGM Genomes
* also provides tar.gz compressed file

5. prokka/
Prokka annotation that contain gff, faa, fna ect.

6. rgi/
antibiotics resistant gene annotation by RGI

7. SNV/
Single nucleotide variants of 2,821 species
column information
1) || seperated SNV information
i ] Contig
ii ] Location
iii] Reference allele
iv ] Alternative allele

2 ~ ) SNV information
0: Reference allele
1: Alternative allele
255: Not alignes


Present directory - data/genome_catalog/HRGM_Genomes

Name Last modified Size
Parent Directory--
16S_rRNA2021-06-25 20:40:31-
HRGM_Genome-Sequences2021-11-23 19:49:06-
SNV2020-11-09 19:35:20-
all_genome_non-redundant2020-11-17 14:39:00-
all_genome_redundant2020-11-13 15:20:56-
antismash2020-11-09 19:10:13-
epitope2020-11-09 19:26:49-
prokka2021-04-22 17:25:02-
rgi2020-11-07 13:41:34-
HRGM_Genome-Sequences.tar.gz2020-11-07 13:50:113 GB
HRGM_Genomes_metadata.tsv2020-11-13 09:47:341 MB
HRGM_kraken2_customdb.tar.gz2021-03-20 00:04:2417 GB
README.txt2020-11-09 19:30:51855 B