1. 16S_rRNA/
16S rRNA sequences of 2,542 species
2. antismash/
antiSMASH results
3. epitopes/
Genes that contain IEDB autoimmune disease related human epitope.
column information
1) Genes
2) Epitope_ID
3) Epitope sequence
4) Alignment score (see original paper of HRGM)
5) Epitope information (IEDB accession|antigen name|antigen accession)
4. HRGM_Genome-Sequences/
Genome sequences of 5,414 HRGM Genomes
* also provides tar.gz compressed file
5. prokka/
Prokka annotation that contain gff, faa, fna ect.
6. rgi/
antibiotics resistant gene annotation by RGI
7. SNV/
Single nucleotide variants of 2,821 species
column information
1) || seperated SNV information
i ] Contig
ii ] Location
iii] Reference allele
iv ] Alternative allele
2 ~ ) SNV information
0: Reference allele
1: Alternative allele
255: Not alignes
Present directory - data/genome_catalog/HRGM_Genomes
Name | Last modified | Size | |
---|---|---|---|
Parent Directory | - | - | |
16S_rRNA | 2021-06-25 20:40:31 | - | |
HRGM_Genome-Sequences | 2021-11-23 19:49:06 | - | |
SNV | 2020-11-09 19:35:20 | - | |
all_genome_non-redundant | 2020-11-17 14:39:00 | - | |
all_genome_redundant | 2020-11-13 15:20:56 | - | |
antismash | 2020-11-09 19:10:13 | - | |
epitope | 2020-11-09 19:26:49 | - | |
prokka | 2021-04-22 17:25:02 | - | |
rgi | 2020-11-07 13:41:34 | - | |
HRGM_Genome-Sequences.tar.gz | 2020-11-07 13:50:11 | 3 GB | |
HRGM_Genomes_metadata.tsv | 2020-11-13 09:47:34 | 1 MB | |
HRGM_kraken2_customdb.tar.gz | 2021-03-20 00:04:24 | 17 GB | |
README.txt | 2020-11-09 19:30:51 | 855 B |