HRGM_Genome_5088 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00004_HRGM_G.. (original name was: HRGM_Genome_5088_4) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	bacteriocin,NRPS	12,924	76,588

c00012_HRGM_G.. (original name was: HRGM_Genome_5088_12) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	sactipeptide	1	13,147

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_5088_1) (Genus species); c00002_HRGM_G.. (original name was: HRGM_Genome_5088_2) (Genus species); c00003_HRGM_G.. (original name was: HRGM_Genome_5088_3) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_5088_5) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_5088_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_5088_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_5088_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_5088_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_5088_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_5088_11) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_5088_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_5088_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_5088_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_5088_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_5088_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_5088_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_5088_19) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_5088_20) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_5088_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_5088_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_5088_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_5088_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_5088_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_5088_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_5088_27) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_5088_28) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_5088_29) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_5088_30) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_5088_31) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_5088_32) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_5088_33) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_5088_34) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_5088_35) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_5088_36) (Genus species); c00037_HRGM_G.. (original name was: HRGM_Genome_5088_37) (Genus species); c00038_HRGM_G.. (original name was: HRGM_Genome_5088_38) (Genus species); c00039_HRGM_G.. (original name was: HRGM_Genome_5088_39) (Genus species); c00040_HRGM_G.. (original name was: HRGM_Genome_5088_40) (Genus species); c00041_HRGM_G.. (original name was: HRGM_Genome_5088_41) (Genus species); c00042_HRGM_G.. (original name was: HRGM_Genome_5088_42) (Genus species); c00043_HRGM_G.. (original name was: HRGM_Genome_5088_43) (Genus species); c00044_HRGM_G.. (original name was: HRGM_Genome_5088_44) (Genus species); c00045_HRGM_G.. (original name was: HRGM_Genome_5088_45) (Genus species); c00046_HRGM_G.. (original name was: HRGM_Genome_5088_46) (Genus species); c00047_HRGM_G.. (original name was: HRGM_Genome_5088_47) (Genus species); c00048_HRGM_G.. (original name was: HRGM_Genome_5088_48) (Genus species); c00049_HRGM_G.. (original name was: HRGM_Genome_5088_49) (Genus species); c00050_HRGM_G.. (original name was: HRGM_Genome_5088_50) (Genus species); c00051_HRGM_G.. (original name was: HRGM_Genome_5088_51) (Genus species); c00052_HRGM_G.. (original name was: HRGM_Genome_5088_52) (Genus species); c00053_HRGM_G.. (original name was: HRGM_Genome_5088_53) (Genus species); c00054_HRGM_G.. (original name was: HRGM_Genome_5088_54) (Genus species); c00055_HRGM_G.. (original name was: HRGM_Genome_5088_55) (Genus species); c00056_HRGM_G.. (original name was: HRGM_Genome_5088_56) (Genus species); c00057_HRGM_G.. (original name was: HRGM_Genome_5088_57) (Genus species); c00058_HRGM_G.. (original name was: HRGM_Genome_5088_58) (Genus species); c00059_HRGM_G.. (original name was: HRGM_Genome_5088_59) (Genus species); c00060_HRGM_G.. (original name was: HRGM_Genome_5088_60) (Genus species); c00061_HRGM_G.. (original name was: HRGM_Genome_5088_61) (Genus species); c00062_HRGM_G.. (original name was: HRGM_Genome_5088_62) (Genus species); c00063_HRGM_G.. (original name was: HRGM_Genome_5088_63) (Genus species)

Compact view

c00004_HRGM_G.. - Region 1 - NRPS,bacteriocin

Download region GenBank file

Location: 12,924 - 76,588 nt. (total: 63,665 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 12923 - 76588:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - X - tyr)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 24159 - 76588:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - X - tyr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_5088_CDS_00785

Search NORINE for peptide: strict or relaxed

CAL_domain (38..463): pk

minowa: fatty_acid

Prediction, score:

fatty_acid: 135.2
NH2: 14.6
shikimic_acid: 0.0
Acetyl-CoA: 0.0
AHBA: 0.0

AMP-binding (1104..1496): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWlGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

AMP-binding (2137..2525): X

NRPSPredictor2: hydrophobic-aromatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DaaKVAAIvK
Nearest Stachelhaus code:: bht
Stachelhaus code match:: 70% (weak)

AMP-binding (3165..3553): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAaTlAAIGK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 80% (moderate)

c00012_HRGM_G.. - Region 1 - sactipeptide

Download region GenBank file

Location: 1 - 13,147 nt. (total: 13,147 nt) Show pHMM detection rules used

Region on contig edge.

sactipeptide: (subtilosin or thuricin or TIGR04404 or TIGR03973)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Sactipeptides

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

Sactipeptide predictions

Sactipeptides - No core peptides found.

Sactipeptides

Core peptide predictions

No core peptides found.