HRGM_Genome_4571 - 1 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00002_HRGM_G.. (original name was: HRGM_Genome_4571_2) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	NRPS	1	28,798	N-octanoyl-Met-Phe-H	NRP	33%

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_4571_1) (Genus species); c00003_HRGM_G.. (original name was: HRGM_Genome_4571_3) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_4571_4) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_4571_5) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_4571_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_4571_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_4571_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_4571_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_4571_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_4571_11) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_4571_12) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_4571_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_4571_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_4571_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_4571_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_4571_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_4571_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_4571_19) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_4571_20) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_4571_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_4571_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_4571_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_4571_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_4571_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_4571_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_4571_27) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_4571_28) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_4571_29) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_4571_30) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_4571_31) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_4571_32) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_4571_33) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_4571_34) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_4571_35) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_4571_36) (Genus species); c00037_HRGM_G.. (original name was: HRGM_Genome_4571_37) (Genus species); c00038_HRGM_G.. (original name was: HRGM_Genome_4571_38) (Genus species); c00039_HRGM_G.. (original name was: HRGM_Genome_4571_39) (Genus species); c00040_HRGM_G.. (original name was: HRGM_Genome_4571_40) (Genus species); c00041_HRGM_G.. (original name was: HRGM_Genome_4571_41) (Genus species); c00042_HRGM_G.. (original name was: HRGM_Genome_4571_42) (Genus species); c00043_HRGM_G.. (original name was: HRGM_Genome_4571_43) (Genus species); c00044_HRGM_G.. (original name was: HRGM_Genome_4571_44) (Genus species); c00045_HRGM_G.. (original name was: HRGM_Genome_4571_45) (Genus species); c00046_HRGM_G.. (original name was: HRGM_Genome_4571_46) (Genus species); c00047_HRGM_G.. (original name was: HRGM_Genome_4571_47) (Genus species); c00048_HRGM_G.. (original name was: HRGM_Genome_4571_48) (Genus species); c00049_HRGM_G.. (original name was: HRGM_Genome_4571_49) (Genus species); c00050_HRGM_G.. (original name was: HRGM_Genome_4571_50) (Genus species); c00051_HRGM_G.. (original name was: HRGM_Genome_4571_51) (Genus species); c00052_HRGM_G.. (original name was: HRGM_Genome_4571_52) (Genus species); c00053_HRGM_G.. (original name was: HRGM_Genome_4571_53) (Genus species); c00054_HRGM_G.. (original name was: HRGM_Genome_4571_54) (Genus species); c00055_HRGM_G.. (original name was: HRGM_Genome_4571_55) (Genus species); c00056_HRGM_G.. (original name was: HRGM_Genome_4571_56) (Genus species); c00057_HRGM_G.. (original name was: HRGM_Genome_4571_57) (Genus species); c00058_HRGM_G.. (original name was: HRGM_Genome_4571_58) (Genus species); c00059_HRGM_G.. (original name was: HRGM_Genome_4571_59) (Genus species); c00060_HRGM_G.. (original name was: HRGM_Genome_4571_60) (Genus species); c00061_HRGM_G.. (original name was: HRGM_Genome_4571_61) (Genus species); c00062_HRGM_G.. (original name was: HRGM_Genome_4571_62) (Genus species); c00063_HRGM_G.. (original name was: HRGM_Genome_4571_63) (Genus species); c00064_HRGM_G.. (original name was: HRGM_Genome_4571_64) (Genus species); c00065_HRGM_G.. (original name was: HRGM_Genome_4571_65) (Genus species); c00066_HRGM_G.. (original name was: HRGM_Genome_4571_66) (Genus species); c00067_HRGM_G.. (original name was: HRGM_Genome_4571_67) (Genus species); c00068_HRGM_G.. (original name was: HRGM_Genome_4571_68) (Genus species); c00069_HRGM_G.. (original name was: HRGM_Genome_4571_69) (Genus species); c00070_HRGM_G.. (original name was: HRGM_Genome_4571_70) (Genus species); c00071_HRGM_G.. (original name was: HRGM_Genome_4571_71) (Genus species); c00072_HRGM_G.. (original name was: HRGM_Genome_4571_72) (Genus species); c00073_HRGM_G.. (original name was: HRGM_Genome_4571_73) (Genus species); c00074_HRGM_G.. (original name was: HRGM_Genome_4571_74) (Genus species); c00075_HRGM_G.. (original name was: HRGM_Genome_4571_75) (Genus species); c00076_HRGM_G.. (original name was: HRGM_Genome_4571_76) (Genus species); c00077_HRGM_G.. (original name was: HRGM_Genome_4571_77) (Genus species); c00078_HRGM_G.. (original name was: HRGM_Genome_4571_78) (Genus species); c00079_HRGM_G.. (original name was: HRGM_Genome_4571_79) (Genus species); c00080_HRGM_G.. (original name was: HRGM_Genome_4571_80) (Genus species); c00081_HRGM_G.. (original name was: HRGM_Genome_4571_81) (Genus species); c00082_HRGM_G.. (original name was: HRGM_Genome_4571_82) (Genus species); c00083_HRGM_G.. (original name was: HRGM_Genome_4571_83) (Genus species); c00084_HRGM_G.. (original name was: HRGM_Genome_4571_84) (Genus species); c00085_HRGM_G.. (original name was: HRGM_Genome_4571_85) (Genus species); c00086_HRGM_G.. (original name was: HRGM_Genome_4571_86) (Genus species); c00087_HRGM_G.. (original name was: HRGM_Genome_4571_87) (Genus species); c00088_HRGM_G.. (original name was: HRGM_Genome_4571_88) (Genus species); c00089_HRGM_G.. (original name was: HRGM_Genome_4571_89) (Genus species); c00090_HRGM_G.. (original name was: HRGM_Genome_4571_90) (Genus species); c00091_HRGM_G.. (original name was: HRGM_Genome_4571_91) (Genus species); c00092_HRGM_G.. (original name was: HRGM_Genome_4571_92) (Genus species); c00093_HRGM_G.. (original name was: HRGM_Genome_4571_93) (Genus species); c00094_HRGM_G.. (original name was: HRGM_Genome_4571_94) (Genus species); c00095_HRGM_G.. (original name was: HRGM_Genome_4571_95) (Genus species); c00096_HRGM_G.. (original name was: HRGM_Genome_4571_96) (Genus species); c00097_HRGM_G.. (original name was: HRGM_Genome_4571_97) (Genus species); c00098_HRGM_G.. (original name was: HRGM_Genome_4571_98) (Genus species); c00099_HRGM_G.. (original name was: HRGM_Genome_4571_99) (Genus species); c00100_HRGM_G.. (original name was: HRGM_Genome_4571_100) (Genus species); c00101_HRGM_G.. (original name was: HRGM_Genome_4571_101) (Genus species); c00102_HRGM_G.. (original name was: HRGM_Genome_4571_102) (Genus species); c00103_HRGM_G.. (original name was: HRGM_Genome_4571_103) (Genus species); c00104_HRGM_G.. (original name was: HRGM_Genome_4571_104) (Genus species); c00105_HRGM_G.. (original name was: HRGM_Genome_4571_105) (Genus species); c00106_HRGM_G.. (original name was: HRGM_Genome_4571_106) (Genus species); c00107_HRGM_G.. (original name was: HRGM_Genome_4571_107) (Genus species); c00108_HRGM_G.. (original name was: HRGM_Genome_4571_108) (Genus species); c00109_HRGM_G.. (original name was: HRGM_Genome_4571_109) (Genus species); c00110_HRGM_G.. (original name was: HRGM_Genome_4571_110) (Genus species); c00111_HRGM_G.. (original name was: HRGM_Genome_4571_111) (Genus species); c00112_HRGM_G.. (original name was: HRGM_Genome_4571_112) (Genus species); c00113_HRGM_G.. (original name was: HRGM_Genome_4571_113) (Genus species); c00114_HRGM_G.. (original name was: HRGM_Genome_4571_114) (Genus species); c00115_HRGM_G.. (original name was: HRGM_Genome_4571_115) (Genus species); c00116_HRGM_G.. (original name was: HRGM_Genome_4571_116) (Genus species); c00117_HRGM_G.. (original name was: HRGM_Genome_4571_117) (Genus species); c00118_HRGM_G.. (original name was: HRGM_Genome_4571_118) (Genus species); c00119_HRGM_G.. (original name was: HRGM_Genome_4571_119) (Genus species); c00120_HRGM_G.. (original name was: HRGM_Genome_4571_120) (Genus species); c00121_HRGM_G.. (original name was: HRGM_Genome_4571_121) (Genus species); c00122_HRGM_G.. (original name was: HRGM_Genome_4571_122) (Genus species); c00123_HRGM_G.. (original name was: HRGM_Genome_4571_123) (Genus species); c00124_HRGM_G.. (original name was: HRGM_Genome_4571_124) (Genus species); c00125_HRGM_G.. (original name was: HRGM_Genome_4571_125) (Genus species); c00126_HRGM_G.. (original name was: HRGM_Genome_4571_126) (Genus species)

Compact view

c00002_HRGM_G.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 28,798 nt. (total: 28,798 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 28798:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_4571_CDS_00042

Search NORINE for peptide: strict or relaxed

AMP-binding (24..454): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: ecTiIGgpvK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 40% (weak)

HRGM_Genome_4571_CDS_00043

Search NORINE for peptide: strict or relaxed

AMP-binding (454..845): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DlFcLGssFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 60% (weak)

AMP-binding (1472..1866): X

NRPSPredictor2: gly, ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiFFyGaViK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 60% (weak)