HRGM_Genome_4532 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00012_HRGM_G.. (original name was: HRGM_Genome_4532_12) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	bacteriocin	30,244	41,302

c00023_HRGM_G.. (original name was: HRGM_Genome_4532_23) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	NRPS	1	28,010

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_4532_1) (Genus species); c00002_HRGM_G.. (original name was: HRGM_Genome_4532_2) (Genus species); c00003_HRGM_G.. (original name was: HRGM_Genome_4532_3) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_4532_4) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_4532_5) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_4532_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_4532_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_4532_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_4532_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_4532_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_4532_11) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_4532_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_4532_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_4532_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_4532_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_4532_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_4532_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_4532_19) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_4532_20) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_4532_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_4532_22) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_4532_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_4532_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_4532_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_4532_27) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_4532_28) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_4532_29) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_4532_30) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_4532_31) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_4532_32) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_4532_33) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_4532_34) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_4532_35) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_4532_36) (Genus species); c00037_HRGM_G.. (original name was: HRGM_Genome_4532_37) (Genus species)

Compact view

c00012_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 30,244 - 41,302 nt. (total: 11,059 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00023_HRGM_G.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 28,010 nt. (total: 28,010 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 28010:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_4532_CDS_01895

Search NORINE for peptide: strict or relaxed

AMP-binding (464..847): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAlSIGqVaK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 70% (weak)

AMP-binding (1481..1871): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: ser
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DitqiAmVYK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 50% (weak)

HRGM_Genome_4532_CDS_01898

Search NORINE for peptide: strict or relaxed

AMP-binding (26..446): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gLclvGGPLK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 60% (weak)