No secondary metabolite regions were found in these records:
c00001_HRGM_G.. (original name was: HRGM_Genome_4509_1) (Genus species)
c00002_HRGM_G.. (original name was: HRGM_Genome_4509_2) (Genus species)
c00003_HRGM_G.. (original name was: HRGM_Genome_4509_3) (Genus species)
c00004_HRGM_G.. (original name was: HRGM_Genome_4509_4) (Genus species)
c00005_HRGM_G.. (original name was: HRGM_Genome_4509_5) (Genus species)
c00007_HRGM_G.. (original name was: HRGM_Genome_4509_7) (Genus species)
c00009_HRGM_G.. (original name was: HRGM_Genome_4509_9) (Genus species)
c00010_HRGM_G.. (original name was: HRGM_Genome_4509_10) (Genus species)
c00011_HRGM_G.. (original name was: HRGM_Genome_4509_11) (Genus species)
c00012_HRGM_G.. (original name was: HRGM_Genome_4509_12) (Genus species)
c00013_HRGM_G.. (original name was: HRGM_Genome_4509_13) (Genus species)
c00014_HRGM_G.. (original name was: HRGM_Genome_4509_14) (Genus species)
c00015_HRGM_G.. (original name was: HRGM_Genome_4509_15) (Genus species)
c00016_HRGM_G.. (original name was: HRGM_Genome_4509_16) (Genus species)
c00017_HRGM_G.. (original name was: HRGM_Genome_4509_17) (Genus species)
c00018_HRGM_G.. (original name was: HRGM_Genome_4509_18) (Genus species)
c00019_HRGM_G.. (original name was: HRGM_Genome_4509_19) (Genus species)
c00020_HRGM_G.. (original name was: HRGM_Genome_4509_20) (Genus species)
Compact view
c00006_HRGM_G.. - Region 1 - lanthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key. More detailed help is available here.
lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))
Legend:
core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Lanthipeptides
ClusterBlast
KnownClusterBlast
SubClusterBlast
Lanthipeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.
Lanthipeptide(s) for HRGM_Genome_4509_CDS_00835 - Putative Class I
Shows clusters from the antiSMASH database and other clusters of interest that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the antiSMASH database (if applicable).
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the MiBIG database.
No matches found.
Similar subclusters
Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region.
No matches found.
Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.
HRGM_Genome_4509_CDS_00833 - Class I
Cleavage pHMM score: -3.80
RODEO score: 20
Monoisotopic mass: 3482.8 Da
Molecular weight: 3485.2 Da
Number of bridges: 6
Alternative weights
(assuming N unmodified Ser/Thr residues)
3503.2 Da N = 1
3521.3 Da N = 2
3539.3 Da N = 3
c00008_HRGM_G.. - Region 1 - bacteriocin
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key. More detailed help is available here.
bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)
Legend:
core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
ClusterBlast
KnownClusterBlast
SubClusterBlast
Similar gene clusters
Shows clusters from the antiSMASH database and other clusters of interest that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the antiSMASH database (if applicable).
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the MiBIG database.
No matches found.
Similar subclusters
Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region.
reset view
zoom to selection