HRGM_Genome_3867 - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00030_HRGM_G.. (original name was: HRGM_Genome_3867_30) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 30.1	bacteriocin	16,313	26,591

c00037_HRGM_G.. (original name was: HRGM_Genome_3867_37) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	NRPS	1	24,131

c00072_HRGM_G.. (original name was: HRGM_Genome_3867_72) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 72.1	sactipeptide	510	13,829

c00093_HRGM_G.. (original name was: HRGM_Genome_3867_93) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 93.1	bacteriocin	1,956	10,113

Region	Type	From	To	Similarity
Region 30.1	bacteriocin	16,313	26,591
Region 37.1	NRPS	1	24,131
Region 72.1	sactipeptide	510	13,829
Region 93.1	bacteriocin	1,956	10,113

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_3867_1) (Genus species); c00002_HRGM_G.. (original name was: HRGM_Genome_3867_2) (Genus species); c00003_HRGM_G.. (original name was: HRGM_Genome_3867_3) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_3867_4) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_3867_5) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_3867_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_3867_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_3867_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_3867_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_3867_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_3867_11) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_3867_12) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_3867_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_3867_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_3867_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_3867_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_3867_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_3867_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_3867_19) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_3867_20) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_3867_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_3867_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_3867_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_3867_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_3867_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_3867_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_3867_27) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_3867_28) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_3867_29) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_3867_31) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_3867_32) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_3867_33) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_3867_34) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_3867_35) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_3867_36) (Genus species); c00038_HRGM_G.. (original name was: HRGM_Genome_3867_38) (Genus species); c00039_HRGM_G.. (original name was: HRGM_Genome_3867_39) (Genus species); c00040_HRGM_G.. (original name was: HRGM_Genome_3867_40) (Genus species); c00041_HRGM_G.. (original name was: HRGM_Genome_3867_41) (Genus species); c00042_HRGM_G.. (original name was: HRGM_Genome_3867_42) (Genus species); c00043_HRGM_G.. (original name was: HRGM_Genome_3867_43) (Genus species); c00044_HRGM_G.. (original name was: HRGM_Genome_3867_44) (Genus species); c00045_HRGM_G.. (original name was: HRGM_Genome_3867_45) (Genus species); c00046_HRGM_G.. (original name was: HRGM_Genome_3867_46) (Genus species); c00047_HRGM_G.. (original name was: HRGM_Genome_3867_47) (Genus species); c00048_HRGM_G.. (original name was: HRGM_Genome_3867_48) (Genus species); c00049_HRGM_G.. (original name was: HRGM_Genome_3867_49) (Genus species); c00050_HRGM_G.. (original name was: HRGM_Genome_3867_50) (Genus species); c00051_HRGM_G.. (original name was: HRGM_Genome_3867_51) (Genus species); c00052_HRGM_G.. (original name was: HRGM_Genome_3867_52) (Genus species); c00053_HRGM_G.. (original name was: HRGM_Genome_3867_53) (Genus species); c00054_HRGM_G.. (original name was: HRGM_Genome_3867_54) (Genus species); c00055_HRGM_G.. (original name was: HRGM_Genome_3867_55) (Genus species); c00056_HRGM_G.. (original name was: HRGM_Genome_3867_56) (Genus species); c00057_HRGM_G.. (original name was: HRGM_Genome_3867_57) (Genus species); c00058_HRGM_G.. (original name was: HRGM_Genome_3867_58) (Genus species); c00059_HRGM_G.. (original name was: HRGM_Genome_3867_59) (Genus species); c00060_HRGM_G.. (original name was: HRGM_Genome_3867_60) (Genus species); c00061_HRGM_G.. (original name was: HRGM_Genome_3867_61) (Genus species); c00062_HRGM_G.. (original name was: HRGM_Genome_3867_62) (Genus species); c00063_HRGM_G.. (original name was: HRGM_Genome_3867_63) (Genus species); c00064_HRGM_G.. (original name was: HRGM_Genome_3867_64) (Genus species); c00065_HRGM_G.. (original name was: HRGM_Genome_3867_65) (Genus species); c00066_HRGM_G.. (original name was: HRGM_Genome_3867_66) (Genus species); c00067_HRGM_G.. (original name was: HRGM_Genome_3867_67) (Genus species); c00068_HRGM_G.. (original name was: HRGM_Genome_3867_68) (Genus species); c00069_HRGM_G.. (original name was: HRGM_Genome_3867_69) (Genus species); c00070_HRGM_G.. (original name was: HRGM_Genome_3867_70) (Genus species); c00071_HRGM_G.. (original name was: HRGM_Genome_3867_71) (Genus species); c00073_HRGM_G.. (original name was: HRGM_Genome_3867_73) (Genus species); c00074_HRGM_G.. (original name was: HRGM_Genome_3867_74) (Genus species); c00075_HRGM_G.. (original name was: HRGM_Genome_3867_75) (Genus species); c00076_HRGM_G.. (original name was: HRGM_Genome_3867_76) (Genus species); c00077_HRGM_G.. (original name was: HRGM_Genome_3867_77) (Genus species); c00078_HRGM_G.. (original name was: HRGM_Genome_3867_78) (Genus species); c00079_HRGM_G.. (original name was: HRGM_Genome_3867_79) (Genus species); c00080_HRGM_G.. (original name was: HRGM_Genome_3867_80) (Genus species); c00081_HRGM_G.. (original name was: HRGM_Genome_3867_81) (Genus species); c00082_HRGM_G.. (original name was: HRGM_Genome_3867_82) (Genus species); c00083_HRGM_G.. (original name was: HRGM_Genome_3867_83) (Genus species); c00084_HRGM_G.. (original name was: HRGM_Genome_3867_84) (Genus species); c00085_HRGM_G.. (original name was: HRGM_Genome_3867_85) (Genus species); c00086_HRGM_G.. (original name was: HRGM_Genome_3867_86) (Genus species); c00087_HRGM_G.. (original name was: HRGM_Genome_3867_87) (Genus species); c00088_HRGM_G.. (original name was: HRGM_Genome_3867_88) (Genus species); c00089_HRGM_G.. (original name was: HRGM_Genome_3867_89) (Genus species); c00090_HRGM_G.. (original name was: HRGM_Genome_3867_90) (Genus species); c00091_HRGM_G.. (original name was: HRGM_Genome_3867_91) (Genus species); c00092_HRGM_G.. (original name was: HRGM_Genome_3867_92) (Genus species); c00094_HRGM_G.. (original name was: HRGM_Genome_3867_94) (Genus species); c00095_HRGM_G.. (original name was: HRGM_Genome_3867_95) (Genus species); c00096_HRGM_G.. (original name was: HRGM_Genome_3867_96) (Genus species); c00097_HRGM_G.. (original name was: HRGM_Genome_3867_97) (Genus species); c00098_HRGM_G.. (original name was: HRGM_Genome_3867_98) (Genus species); c00099_HRGM_G.. (original name was: HRGM_Genome_3867_99) (Genus species); c00100_HRGM_G.. (original name was: HRGM_Genome_3867_100) (Genus species); c00101_HRGM_G.. (original name was: HRGM_Genome_3867_101) (Genus species); c00102_HRGM_G.. (original name was: HRGM_Genome_3867_102) (Genus species); c00103_HRGM_G.. (original name was: HRGM_Genome_3867_103) (Genus species); c00104_HRGM_G.. (original name was: HRGM_Genome_3867_104) (Genus species); c00105_HRGM_G.. (original name was: HRGM_Genome_3867_105) (Genus species); c00106_HRGM_G.. (original name was: HRGM_Genome_3867_106) (Genus species); c00107_HRGM_G.. (original name was: HRGM_Genome_3867_107) (Genus species); c00108_HRGM_G.. (original name was: HRGM_Genome_3867_108) (Genus species); c00109_HRGM_G.. (original name was: HRGM_Genome_3867_109) (Genus species); c00110_HRGM_G.. (original name was: HRGM_Genome_3867_110) (Genus species); c00111_HRGM_G.. (original name was: HRGM_Genome_3867_111) (Genus species); c00112_HRGM_G.. (original name was: HRGM_Genome_3867_112) (Genus species); c00113_HRGM_G.. (original name was: HRGM_Genome_3867_113) (Genus species); c00114_HRGM_G.. (original name was: HRGM_Genome_3867_114) (Genus species); c00115_HRGM_G.. (original name was: HRGM_Genome_3867_115) (Genus species); c00116_HRGM_G.. (original name was: HRGM_Genome_3867_116) (Genus species); c00117_HRGM_G.. (original name was: HRGM_Genome_3867_117) (Genus species); c00118_HRGM_G.. (original name was: HRGM_Genome_3867_118) (Genus species); c00119_HRGM_G.. (original name was: HRGM_Genome_3867_119) (Genus species); c00120_HRGM_G.. (original name was: HRGM_Genome_3867_120) (Genus species); c00121_HRGM_G.. (original name was: HRGM_Genome_3867_121) (Genus species); c00122_HRGM_G.. (original name was: HRGM_Genome_3867_122) (Genus species); c00123_HRGM_G.. (original name was: HRGM_Genome_3867_123) (Genus species); c00124_HRGM_G.. (original name was: HRGM_Genome_3867_124) (Genus species); c00125_HRGM_G.. (original name was: HRGM_Genome_3867_125) (Genus species); c00126_HRGM_G.. (original name was: HRGM_Genome_3867_126) (Genus species); c00127_HRGM_G.. (original name was: HRGM_Genome_3867_127) (Genus species); c00128_HRGM_G.. (original name was: HRGM_Genome_3867_128) (Genus species); c00129_HRGM_G.. (original name was: HRGM_Genome_3867_129) (Genus species); c00130_HRGM_G.. (original name was: HRGM_Genome_3867_130) (Genus species); c00131_HRGM_G.. (original name was: HRGM_Genome_3867_131) (Genus species); c00132_HRGM_G.. (original name was: HRGM_Genome_3867_132) (Genus species); c00133_HRGM_G.. (original name was: HRGM_Genome_3867_133) (Genus species); c00134_HRGM_G.. (original name was: HRGM_Genome_3867_134) (Genus species); c00135_HRGM_G.. (original name was: HRGM_Genome_3867_135) (Genus species); c00136_HRGM_G.. (original name was: HRGM_Genome_3867_136) (Genus species); c00137_HRGM_G.. (original name was: HRGM_Genome_3867_137) (Genus species); c00138_HRGM_G.. (original name was: HRGM_Genome_3867_138) (Genus species); c00139_HRGM_G.. (original name was: HRGM_Genome_3867_139) (Genus species); c00140_HRGM_G.. (original name was: HRGM_Genome_3867_140) (Genus species); c00141_HRGM_G.. (original name was: HRGM_Genome_3867_141) (Genus species); c00142_HRGM_G.. (original name was: HRGM_Genome_3867_142) (Genus species); c00143_HRGM_G.. (original name was: HRGM_Genome_3867_143) (Genus species)

Compact view

c00030_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 16,313 - 26,591 nt. (total: 10,279 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00037_HRGM_G.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 24,131 nt. (total: 24,131 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 24131:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_3867_CDS_01420

Search NORINE for peptide: strict or relaxed

AMP-binding (437..825): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAmFsGLVcK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 70% (weak)

AMP-binding (1457..1847): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DMKnLGtVsK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 70% (weak)

c00072_HRGM_G.. - Region 1 - sactipeptide

Download region GenBank file

Location: 510 - 13,829 nt. (total: 13,320 nt) Show pHMM detection rules used

Region on contig edge.

sactipeptide: (subtilosin or thuricin or TIGR04404 or TIGR03973)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Sactipeptides

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

Sactipeptide predictions

Sactipeptides - No core peptides found.

Sactipeptides

Core peptide predictions

No core peptides found.

c00093_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 1,956 - 10,113 nt. (total: 8,158 nt) Show pHMM detection rules used

Region on contig edge.

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.