HRGM_Genome_3671 - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00005_HRGM_G.. (original name was: HRGM_Genome_3671_5) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	terpene	121,076	142,205

c00013_HRGM_G.. (original name was: HRGM_Genome_3671_13) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	NRPS-like	16,187	58,712

c00020_HRGM_G.. (original name was: HRGM_Genome_3671_20) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	arylpolyene	1	43,537

c00021_HRGM_G.. (original name was: HRGM_Genome_3671_21) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	terpene	22,030	42,301

Region	Type	From	To	Similarity
Region 5.1	terpene	121,076	142,205
Region 13.1	NRPS-like	16,187	58,712
Region 20.1	arylpolyene	1	43,537
Region 21.1	terpene	22,030	42,301

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_3671_1) (Genus species); c00002_HRGM_G.. (original name was: HRGM_Genome_3671_2) (Genus species); c00003_HRGM_G.. (original name was: HRGM_Genome_3671_3) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_3671_4) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_3671_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_3671_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_3671_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_3671_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_3671_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_3671_11) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_3671_12) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_3671_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_3671_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_3671_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_3671_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_3671_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_3671_19) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_3671_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_3671_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_3671_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_3671_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_3671_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_3671_27) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_3671_28) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_3671_29) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_3671_30) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_3671_31) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_3671_32) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_3671_33) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_3671_34) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_3671_35) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_3671_36) (Genus species); c00037_HRGM_G.. (original name was: HRGM_Genome_3671_37) (Genus species); c00038_HRGM_G.. (original name was: HRGM_Genome_3671_38) (Genus species); c00039_HRGM_G.. (original name was: HRGM_Genome_3671_39) (Genus species)

Compact view

c00005_HRGM_G.. - Region 1 - terpene

Download region GenBank file

Location: 121,076 - 142,205 nt. (total: 21,130 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00013_HRGM_G.. - Region 1 - NRPS-like

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Location: 16,187 - 58,712 nt. (total: 42,526 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 16186 - 58712:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_3671_CDS_01449

Search NORINE for peptide: strict or relaxed

AMP-binding (12..408): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: iLgiiGGPiK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 50% (weak)

c00020_HRGM_G.. - Region 1 - arylpolyene

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Location: 1 - 43,537 nt. (total: 43,537 nt) Show pHMM detection rules used

Region on contig edge.

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00021_HRGM_G.. - Region 1 - terpene

Download region GenBank file

Location: 22,030 - 42,301 nt. (total: 20,272 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.