HRGM_Genome_3563 - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00007_HRGM_G.. (original name was: HRGM_Genome_3563_7) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	bacteriocin	25,333	35,701

c00016_HRGM_G.. (original name was: HRGM_Genome_3563_16) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	bacteriocin	17,889	28,155

c00019_HRGM_G.. (original name was: HRGM_Genome_3563_19) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	lanthipeptide,bacteriocin	1	18,406

c00031_HRGM_G.. (original name was: HRGM_Genome_3563_31) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	sactipeptide	28,869	40,675

Region	Type	From	To	Similarity
Region 7.1	bacteriocin	25,333	35,701
Region 16.1	bacteriocin	17,889	28,155
Region 19.1	lanthipeptide,bacteriocin	1	18,406
Region 31.1	sactipeptide	28,869	40,675

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_3563_1) (Genus species); c00002_HRGM_G.. (original name was: HRGM_Genome_3563_2) (Genus species); c00003_HRGM_G.. (original name was: HRGM_Genome_3563_3) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_3563_4) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_3563_5) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_3563_6) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_3563_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_3563_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_3563_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_3563_11) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_3563_12) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_3563_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_3563_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_3563_15) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_3563_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_3563_18) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_3563_20) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_3563_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_3563_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_3563_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_3563_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_3563_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_3563_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_3563_27) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_3563_28) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_3563_29) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_3563_30) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_3563_32) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_3563_33) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_3563_34) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_3563_35) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_3563_36) (Genus species); c00037_HRGM_G.. (original name was: HRGM_Genome_3563_37) (Genus species); c00038_HRGM_G.. (original name was: HRGM_Genome_3563_38) (Genus species); c00039_HRGM_G.. (original name was: HRGM_Genome_3563_39) (Genus species); c00040_HRGM_G.. (original name was: HRGM_Genome_3563_40) (Genus species); c00041_HRGM_G.. (original name was: HRGM_Genome_3563_41) (Genus species); c00042_HRGM_G.. (original name was: HRGM_Genome_3563_42) (Genus species); c00043_HRGM_G.. (original name was: HRGM_Genome_3563_43) (Genus species); c00044_HRGM_G.. (original name was: HRGM_Genome_3563_44) (Genus species); c00045_HRGM_G.. (original name was: HRGM_Genome_3563_45) (Genus species); c00046_HRGM_G.. (original name was: HRGM_Genome_3563_46) (Genus species); c00047_HRGM_G.. (original name was: HRGM_Genome_3563_47) (Genus species); c00048_HRGM_G.. (original name was: HRGM_Genome_3563_48) (Genus species); c00049_HRGM_G.. (original name was: HRGM_Genome_3563_49) (Genus species); c00050_HRGM_G.. (original name was: HRGM_Genome_3563_50) (Genus species); c00051_HRGM_G.. (original name was: HRGM_Genome_3563_51) (Genus species); c00052_HRGM_G.. (original name was: HRGM_Genome_3563_52) (Genus species); c00053_HRGM_G.. (original name was: HRGM_Genome_3563_53) (Genus species); c00054_HRGM_G.. (original name was: HRGM_Genome_3563_54) (Genus species); c00055_HRGM_G.. (original name was: HRGM_Genome_3563_55) (Genus species); c00056_HRGM_G.. (original name was: HRGM_Genome_3563_56) (Genus species); c00057_HRGM_G.. (original name was: HRGM_Genome_3563_57) (Genus species); c00058_HRGM_G.. (original name was: HRGM_Genome_3563_58) (Genus species)

Compact view

c00007_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 25,333 - 35,701 nt. (total: 10,369 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00016_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 17,889 - 28,155 nt. (total: 10,267 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00019_HRGM_G.. - Region 1 - bacteriocin,lanthipeptide

Download region GenBank file

Location: 1 - 18,406 nt. (total: 18,406 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))
bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Lanthipeptides

ClusterBlast

KnownClusterBlast

SubClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00031_HRGM_G.. - Region 1 - sactipeptide

Download region GenBank file

Location: 28,869 - 40,675 nt. (total: 11,807 nt) Show pHMM detection rules used

Region on contig edge.

sactipeptide: (subtilosin or thuricin or TIGR04404 or TIGR03973)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Sactipeptides

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

Sactipeptide predictions

Sactipeptides - No core peptides found.

Sactipeptides

Core peptide predictions

No core peptides found.