HRGM_Genome_3446 - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00053_HRGM_G.. (original name was: HRGM_Genome_3446_53) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 53.1	T1PKS,NRPS	1	8,713

c00072_HRGM_G.. (original name was: HRGM_Genome_3446_72) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 72.1	NRPS	1	3,717

c00083_HRGM_G.. (original name was: HRGM_Genome_3446_83) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 83.1	NRPS	1	8,672

c00096_HRGM_G.. (original name was: HRGM_Genome_3446_96) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 96.1	NRPS	1	6,158

c00107_HRGM_G.. (original name was: HRGM_Genome_3446_107) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 107.1	NRPS-like	1	2,927

Region	Type	From	To	Similarity
Region 53.1	T1PKS,NRPS	1	8,713
Region 72.1	NRPS	1	3,717
Region 83.1	NRPS	1	8,672
Region 96.1	NRPS	1	6,158
Region 107.1	NRPS-like	1	2,927

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_3446_1) (Genus species); c00002_HRGM_G.. (original name was: HRGM_Genome_3446_2) (Genus species); c00003_HRGM_G.. (original name was: HRGM_Genome_3446_3) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_3446_4) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_3446_5) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_3446_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_3446_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_3446_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_3446_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_3446_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_3446_11) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_3446_12) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_3446_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_3446_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_3446_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_3446_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_3446_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_3446_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_3446_19) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_3446_20) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_3446_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_3446_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_3446_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_3446_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_3446_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_3446_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_3446_27) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_3446_28) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_3446_29) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_3446_30) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_3446_31) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_3446_32) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_3446_33) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_3446_34) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_3446_35) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_3446_36) (Genus species); c00037_HRGM_G.. (original name was: HRGM_Genome_3446_37) (Genus species); c00038_HRGM_G.. (original name was: HRGM_Genome_3446_38) (Genus species); c00039_HRGM_G.. (original name was: HRGM_Genome_3446_39) (Genus species); c00040_HRGM_G.. (original name was: HRGM_Genome_3446_40) (Genus species); c00041_HRGM_G.. (original name was: HRGM_Genome_3446_41) (Genus species); c00042_HRGM_G.. (original name was: HRGM_Genome_3446_42) (Genus species); c00043_HRGM_G.. (original name was: HRGM_Genome_3446_43) (Genus species); c00044_HRGM_G.. (original name was: HRGM_Genome_3446_44) (Genus species); c00045_HRGM_G.. (original name was: HRGM_Genome_3446_45) (Genus species); c00046_HRGM_G.. (original name was: HRGM_Genome_3446_46) (Genus species); c00047_HRGM_G.. (original name was: HRGM_Genome_3446_47) (Genus species); c00048_HRGM_G.. (original name was: HRGM_Genome_3446_48) (Genus species); c00049_HRGM_G.. (original name was: HRGM_Genome_3446_49) (Genus species); c00050_HRGM_G.. (original name was: HRGM_Genome_3446_50) (Genus species); c00051_HRGM_G.. (original name was: HRGM_Genome_3446_51) (Genus species); c00052_HRGM_G.. (original name was: HRGM_Genome_3446_52) (Genus species); c00054_HRGM_G.. (original name was: HRGM_Genome_3446_54) (Genus species); c00055_HRGM_G.. (original name was: HRGM_Genome_3446_55) (Genus species); c00056_HRGM_G.. (original name was: HRGM_Genome_3446_56) (Genus species); c00057_HRGM_G.. (original name was: HRGM_Genome_3446_57) (Genus species); c00058_HRGM_G.. (original name was: HRGM_Genome_3446_58) (Genus species); c00059_HRGM_G.. (original name was: HRGM_Genome_3446_59) (Genus species); c00060_HRGM_G.. (original name was: HRGM_Genome_3446_60) (Genus species); c00061_HRGM_G.. (original name was: HRGM_Genome_3446_61) (Genus species); c00062_HRGM_G.. (original name was: HRGM_Genome_3446_62) (Genus species); c00063_HRGM_G.. (original name was: HRGM_Genome_3446_63) (Genus species); c00064_HRGM_G.. (original name was: HRGM_Genome_3446_64) (Genus species); c00065_HRGM_G.. (original name was: HRGM_Genome_3446_65) (Genus species); c00066_HRGM_G.. (original name was: HRGM_Genome_3446_66) (Genus species); c00067_HRGM_G.. (original name was: HRGM_Genome_3446_67) (Genus species); c00068_HRGM_G.. (original name was: HRGM_Genome_3446_68) (Genus species); c00069_HRGM_G.. (original name was: HRGM_Genome_3446_69) (Genus species); c00070_HRGM_G.. (original name was: HRGM_Genome_3446_70) (Genus species); c00071_HRGM_G.. (original name was: HRGM_Genome_3446_71) (Genus species); c00073_HRGM_G.. (original name was: HRGM_Genome_3446_73) (Genus species); c00074_HRGM_G.. (original name was: HRGM_Genome_3446_74) (Genus species); c00075_HRGM_G.. (original name was: HRGM_Genome_3446_75) (Genus species); c00076_HRGM_G.. (original name was: HRGM_Genome_3446_76) (Genus species); c00077_HRGM_G.. (original name was: HRGM_Genome_3446_77) (Genus species); c00078_HRGM_G.. (original name was: HRGM_Genome_3446_78) (Genus species); c00079_HRGM_G.. (original name was: HRGM_Genome_3446_79) (Genus species); c00080_HRGM_G.. (original name was: HRGM_Genome_3446_80) (Genus species); c00081_HRGM_G.. (original name was: HRGM_Genome_3446_81) (Genus species); c00082_HRGM_G.. (original name was: HRGM_Genome_3446_82) (Genus species); c00084_HRGM_G.. (original name was: HRGM_Genome_3446_84) (Genus species); c00085_HRGM_G.. (original name was: HRGM_Genome_3446_85) (Genus species); c00086_HRGM_G.. (original name was: HRGM_Genome_3446_86) (Genus species); c00087_HRGM_G.. (original name was: HRGM_Genome_3446_87) (Genus species); c00088_HRGM_G.. (original name was: HRGM_Genome_3446_88) (Genus species); c00089_HRGM_G.. (original name was: HRGM_Genome_3446_89) (Genus species); c00090_HRGM_G.. (original name was: HRGM_Genome_3446_90) (Genus species); c00091_HRGM_G.. (original name was: HRGM_Genome_3446_91) (Genus species); c00092_HRGM_G.. (original name was: HRGM_Genome_3446_92) (Genus species); c00093_HRGM_G.. (original name was: HRGM_Genome_3446_93) (Genus species); c00094_HRGM_G.. (original name was: HRGM_Genome_3446_94) (Genus species); c00095_HRGM_G.. (original name was: HRGM_Genome_3446_95) (Genus species); c00097_HRGM_G.. (original name was: HRGM_Genome_3446_97) (Genus species); c00098_HRGM_G.. (original name was: HRGM_Genome_3446_98) (Genus species); c00099_HRGM_G.. (original name was: HRGM_Genome_3446_99) (Genus species); c00100_HRGM_G.. (original name was: HRGM_Genome_3446_100) (Genus species); c00101_HRGM_G.. (original name was: HRGM_Genome_3446_101) (Genus species); c00102_HRGM_G.. (original name was: HRGM_Genome_3446_102) (Genus species); c00103_HRGM_G.. (original name was: HRGM_Genome_3446_103) (Genus species); c00104_HRGM_G.. (original name was: HRGM_Genome_3446_104) (Genus species); c00105_HRGM_G.. (original name was: HRGM_Genome_3446_105) (Genus species); c00106_HRGM_G.. (original name was: HRGM_Genome_3446_106) (Genus species); c00108_HRGM_G.. (original name was: HRGM_Genome_3446_108) (Genus species); c00109_HRGM_G.. (original name was: HRGM_Genome_3446_109) (Genus species); c00110_HRGM_G.. (original name was: HRGM_Genome_3446_110) (Genus species); c00111_HRGM_G.. (original name was: HRGM_Genome_3446_111) (Genus species)

Compact view

c00053_HRGM_G.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 1 - 8,713 nt. (total: 8,713 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 8713:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ccmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_3446_CDS_00565

Search NORINE for peptide: strict or relaxed

PKS_AT (331..626): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 91.7%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 174.4
inactive: 156.0
Methoxymalonyl-CoA: 67.8
Methylmalonyl-CoA: 57.8
Propionyl-CoA: 43.0
Benzoyl-CoA: 26.6
Isobutyryl-CoA: 24.0
2-Methylbutyryl-CoA: 16.8
Ethylmalonyl-CoA: 16.2
Acetyl-CoA: 13.3
CHC-CoA: 10.0
3-Methylbutyryl-CoA: 9.0
trans-1,2-CPDA: 8.7
fatty_acid: 0.0

AMP-binding (2050..2446): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

c00072_HRGM_G.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 3,717 nt. (total: 3,717 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 3717:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_3446_CDS_00678

Search NORINE for peptide: strict or relaxed

AMP-binding (250..634): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLyNMSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

c00083_HRGM_G.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 8,672 nt. (total: 8,672 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 8672:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_3446_CDS_00810

Search NORINE for peptide: strict or relaxed

AMP-binding (1639..2036): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNMSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

c00096_HRGM_G.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 6,158 nt. (total: 6,158 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00107_HRGM_G.. - Region 1 - NRPS-like

Download region GenBank file

Location: 1 - 2,927 nt. (total: 2,927 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 2927:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_3446_CDS_00979

Search NORINE for peptide: strict or relaxed

AMP-binding (5..398): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)