No secondary metabolite regions were found in these records:
c00002_HRGM_G.. (original name was: HRGM_Genome_3439_2) (Genus species)
c00003_HRGM_G.. (original name was: HRGM_Genome_3439_3) (Genus species)
c00004_HRGM_G.. (original name was: HRGM_Genome_3439_4) (Genus species)
c00005_HRGM_G.. (original name was: HRGM_Genome_3439_5) (Genus species)
c00006_HRGM_G.. (original name was: HRGM_Genome_3439_6) (Genus species)
c00007_HRGM_G.. (original name was: HRGM_Genome_3439_7) (Genus species)
c00008_HRGM_G.. (original name was: HRGM_Genome_3439_8) (Genus species)
c00010_HRGM_G.. (original name was: HRGM_Genome_3439_10) (Genus species)
c00011_HRGM_G.. (original name was: HRGM_Genome_3439_11) (Genus species)
c00012_HRGM_G.. (original name was: HRGM_Genome_3439_12) (Genus species)
c00013_HRGM_G.. (original name was: HRGM_Genome_3439_13) (Genus species)
c00014_HRGM_G.. (original name was: HRGM_Genome_3439_14) (Genus species)
c00015_HRGM_G.. (original name was: HRGM_Genome_3439_15) (Genus species)
c00016_HRGM_G.. (original name was: HRGM_Genome_3439_16) (Genus species)
c00017_HRGM_G.. (original name was: HRGM_Genome_3439_17) (Genus species)
c00018_HRGM_G.. (original name was: HRGM_Genome_3439_18) (Genus species)
c00019_HRGM_G.. (original name was: HRGM_Genome_3439_19) (Genus species)
c00021_HRGM_G.. (original name was: HRGM_Genome_3439_21) (Genus species)
c00022_HRGM_G.. (original name was: HRGM_Genome_3439_22) (Genus species)
c00023_HRGM_G.. (original name was: HRGM_Genome_3439_23) (Genus species)
c00024_HRGM_G.. (original name was: HRGM_Genome_3439_24) (Genus species)
c00025_HRGM_G.. (original name was: HRGM_Genome_3439_25) (Genus species)
c00026_HRGM_G.. (original name was: HRGM_Genome_3439_26) (Genus species)
c00027_HRGM_G.. (original name was: HRGM_Genome_3439_27) (Genus species)
c00028_HRGM_G.. (original name was: HRGM_Genome_3439_28) (Genus species)
c00029_HRGM_G.. (original name was: HRGM_Genome_3439_29) (Genus species)
c00030_HRGM_G.. (original name was: HRGM_Genome_3439_30) (Genus species)
c00031_HRGM_G.. (original name was: HRGM_Genome_3439_31) (Genus species)
c00032_HRGM_G.. (original name was: HRGM_Genome_3439_32) (Genus species)
c00033_HRGM_G.. (original name was: HRGM_Genome_3439_33) (Genus species)
c00034_HRGM_G.. (original name was: HRGM_Genome_3439_34) (Genus species)
c00035_HRGM_G.. (original name was: HRGM_Genome_3439_35) (Genus species)
c00036_HRGM_G.. (original name was: HRGM_Genome_3439_36) (Genus species)
c00037_HRGM_G.. (original name was: HRGM_Genome_3439_37) (Genus species)
c00038_HRGM_G.. (original name was: HRGM_Genome_3439_38) (Genus species)
Compact view
c00001_HRGM_G.. - Region 1 - thiopeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key. More detailed help is available here.
thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)
Legend:
core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Thiopeptides
ClusterBlast
KnownClusterBlast
SubClusterBlast
Thiopeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash. Predicted tail sequences are also shown.
No core peptides found.
Similar gene clusters
Shows clusters from the antiSMASH database and other clusters of interest that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the antiSMASH database (if applicable).
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the MiBIG database.
No matches found.
Similar subclusters
Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region.
No matches found.
Thiopeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists its possible molecular weights and the scores for cleavage site prediction and RODEO. If relevant, other features, such as macrocycle and amidation, will also be listed.
No core peptides found.
c00009_HRGM_G.. - Region 1 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key. More detailed help is available here.
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
ClusterBlast
KnownClusterBlast
SubClusterBlast
Similar gene clusters
Shows clusters from the antiSMASH database and other clusters of interest that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the antiSMASH database (if applicable).
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the MiBIG database.
Similar subclusters
Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region.
No matches found.
c00020_HRGM_G.. - Region 1 - bacteriocin
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key. More detailed help is available here.
bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)
Legend:
core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
ClusterBlast
KnownClusterBlast
SubClusterBlast
Similar gene clusters
Shows clusters from the antiSMASH database and other clusters of interest that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the antiSMASH database (if applicable).
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the MiBIG database.
No matches found.
Similar subclusters
Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region.
reset view
zoom to selection