No secondary metabolite regions were found in these records:
c00001_HRGM_G.. (original name was: HRGM_Genome_3339_1) (Genus species)
c00002_HRGM_G.. (original name was: HRGM_Genome_3339_2) (Genus species)
c00003_HRGM_G.. (original name was: HRGM_Genome_3339_3) (Genus species)
c00004_HRGM_G.. (original name was: HRGM_Genome_3339_4) (Genus species)
c00005_HRGM_G.. (original name was: HRGM_Genome_3339_5) (Genus species)
c00006_HRGM_G.. (original name was: HRGM_Genome_3339_6) (Genus species)
c00007_HRGM_G.. (original name was: HRGM_Genome_3339_7) (Genus species)
c00009_HRGM_G.. (original name was: HRGM_Genome_3339_9) (Genus species)
c00010_HRGM_G.. (original name was: HRGM_Genome_3339_10) (Genus species)
c00011_HRGM_G.. (original name was: HRGM_Genome_3339_11) (Genus species)
c00012_HRGM_G.. (original name was: HRGM_Genome_3339_12) (Genus species)
c00013_HRGM_G.. (original name was: HRGM_Genome_3339_13) (Genus species)
c00014_HRGM_G.. (original name was: HRGM_Genome_3339_14) (Genus species)
c00015_HRGM_G.. (original name was: HRGM_Genome_3339_15) (Genus species)
c00016_HRGM_G.. (original name was: HRGM_Genome_3339_16) (Genus species)
c00017_HRGM_G.. (original name was: HRGM_Genome_3339_17) (Genus species)
c00018_HRGM_G.. (original name was: HRGM_Genome_3339_18) (Genus species)
c00019_HRGM_G.. (original name was: HRGM_Genome_3339_19) (Genus species)
Compact view
c00008_HRGM_G.. - Region 1 - lanthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key. More detailed help is available here.
lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))
Legend:
core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Lanthipeptides
ClusterBlast
KnownClusterBlast
SubClusterBlast
Lanthipeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.
Lanthipeptide(s) for HRGM_Genome_3339_CDS_01075 - Putative Class II
Shows clusters from the antiSMASH database and other clusters of interest that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the antiSMASH database (if applicable).
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the MiBIG database.
No matches found.
Similar subclusters
Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region.
No matches found.
Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.
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