HRGM_Genome_3240 - 1 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00005_HRGM_G.. (original name was: HRGM_Genome_3240_5) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	NRPS,T1PKS	8,632	67,661

Region	Type	From	To	Most similar known cluster	Similarity
Region 5.1	NRPS,T1PKS	8,632	67,661

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_3240_1) (Genus species); c00002_HRGM_G.. (original name was: HRGM_Genome_3240_2) (Genus species); c00003_HRGM_G.. (original name was: HRGM_Genome_3240_3) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_3240_4) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_3240_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_3240_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_3240_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_3240_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_3240_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_3240_11) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_3240_12) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_3240_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_3240_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_3240_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_3240_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_3240_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_3240_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_3240_19) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_3240_20) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_3240_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_3240_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_3240_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_3240_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_3240_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_3240_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_3240_27) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_3240_28) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_3240_29) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_3240_30) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_3240_31) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_3240_32) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_3240_33) (Genus species)

Compact view

c00005_HRGM_G.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 8,632 - 67,661 nt. (total: 59,030 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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Gene details

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NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 8631 - 67661:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal) + (X) + (X - cys)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 8631 - 63228:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal) + (X) + (X - cys)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 23260 - 67661:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal) + (X) + (X - cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_3240_CDS_00514

Search NORINE for peptide: strict or relaxed

AMP-binding (33..411): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAieIGAVyK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 70% (weak)

AMP-binding (1097..1496): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: cys
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DmYNLgvIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 70% (weak)

HRGM_Genome_3240_CDS_00518

Search NORINE for peptide: strict or relaxed

AMP-binding (139..549): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: aAWwyGSssK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 50% (weak)

HRGM_Genome_3240_CDS_00519

PKS_AT (502..779): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 60.8
Methylmalonyl-CoA: 50.3
Methoxymalonyl-CoA: 49.5
Ethylmalonyl-CoA: 26.2
trans-1,2-CPDA: 21.6
inactive: 16.0
Propionyl-CoA: 14.7
Benzoyl-CoA: 13.7
fatty_acid: 12.1
Isobutyryl-CoA: 11.1
Acetyl-CoA: 9.3
CHC-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0