HRGM_Genome_3080 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00002_HRGM_G.. (original name was: HRGM_Genome_3080_2) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	bacteriocin	114,661	126,859

c00003_HRGM_G.. (original name was: HRGM_Genome_3080_3) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	NRPS	108,656	163,476

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_3080_1) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_3080_4) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_3080_5) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_3080_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_3080_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_3080_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_3080_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_3080_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_3080_11) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_3080_12) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_3080_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_3080_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_3080_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_3080_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_3080_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_3080_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_3080_19) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_3080_20) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_3080_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_3080_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_3080_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_3080_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_3080_25) (Genus species)

Compact view

c00002_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 114,661 - 126,859 nt. (total: 12,199 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00003_HRGM_G.. - Region 1 - NRPS

Download region GenBank file

Location: 108,656 - 163,476 nt. (total: 54,821 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 108655 - 163476:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_3080_CDS_00513

Search NORINE for peptide: strict or relaxed

AMP-binding (429..820): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: cys
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DMFnvGvIWK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 70% (weak)

HRGM_Genome_3080_CDS_00517

Search NORINE for peptide: strict or relaxed

AMP-binding (14..298): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: alPI-----K
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 30% (weak)

HRGM_Genome_3080_CDS_00526

Search NORINE for peptide: strict or relaxed

AMP-binding (12..418): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: hilFIAstsK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 40% (weak)