No secondary metabolite regions were found in these records:
c00002_HRGM_G.. (original name was: HRGM_Genome_2949_2) (Genus species)
c00003_HRGM_G.. (original name was: HRGM_Genome_2949_3) (Genus species)
c00004_HRGM_G.. (original name was: HRGM_Genome_2949_4) (Genus species)
c00005_HRGM_G.. (original name was: HRGM_Genome_2949_5) (Genus species)
c00006_HRGM_G.. (original name was: HRGM_Genome_2949_6) (Genus species)
Compact view
c00001_HRGM_G.. - Region 1 - lanthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key. More detailed help is available here.
lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))
Legend:
core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Lanthipeptides
ClusterBlast
KnownClusterBlast
SubClusterBlast
Lanthipeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.
Lanthipeptide(s) for HRGM_Genome_2949_CDS_00214 - Putative Class II
Shows clusters from the antiSMASH database and other clusters of interest that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the antiSMASH database (if applicable).
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the MiBIG database.
Similar subclusters
Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region.
No matches found.
Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.
HRGM_Genome_2949_CDS_00215 - Class II
Cleavage pHMM score: 5.00
RODEO score: 0
Monoisotopic mass: 2764.3 Da
Molecular weight: 2766.2 Da
Number of bridges: 3
Alternative weights
(assuming N unmodified Ser/Thr residues)
2784.2 Da N = 1
2802.2 Da N = 2
HRGM_Genome_2949_CDS_00216 - Class II
Cleavage pHMM score: 5.00
RODEO score: 0
Monoisotopic mass: 2764.3 Da
Molecular weight: 2766.2 Da
Number of bridges: 3
Alternative weights
(assuming N unmodified Ser/Thr residues)
2784.2 Da N = 1
2802.2 Da N = 2
allorf_0242675_0242890 - Class II
Cleavage pHMM score: -6.00
RODEO score: 0
Monoisotopic mass: 4035.1 Da
Molecular weight: 4037.6 Da
Number of bridges: 2
Alternative weights
(assuming N unmodified Ser/Thr residues)
4055.6 Da N = 1
4073.6 Da N = 2
4091.6 Da N = 3
4109.6 Da N = 4
allorf_0258781_0258990 - Class II
Cleavage pHMM score: -7.20
RODEO score: 0
Monoisotopic mass: 2996.7 Da
Molecular weight: 2998.5 Da
Number of bridges: 1
Alternative weights
(assuming N unmodified Ser/Thr residues)
3016.5 Da N = 1
3034.5 Da N = 2
3052.5 Da N = 3
3070.5 Da N = 4
allorf_0255503_0255643 - Class II
Cleavage pHMM score: -2.20
RODEO score: 0
Monoisotopic mass: 2476.3 Da
Molecular weight: 2477.8 Da
Number of bridges: 1
Alternative weights
(assuming N unmodified Ser/Thr residues)
2495.8 Da N = 1
allorf_0255525_0255629 - Class II
Cleavage pHMM score: -7.00
RODEO score: 0
Monoisotopic mass: 1797.0 Da
Molecular weight: 1798.1 Da
Number of bridges: 1
Alternative weights
(assuming N unmodified Ser/Thr residues)
1816.1 Da N = 1
c00001_HRGM_G.. - Region 2 - thiopeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key. More detailed help is available here.
thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)
Legend:
core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Thiopeptides
ClusterBlast
KnownClusterBlast
SubClusterBlast
Thiopeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash. Predicted tail sequences are also shown.
No core peptides found.
Similar gene clusters
Shows clusters from the antiSMASH database and other clusters of interest that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the antiSMASH database (if applicable).
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the MiBIG database.
No matches found.
Similar subclusters
Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region.
No matches found.
Thiopeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists its possible molecular weights and the scores for cleavage site prediction and RODEO. If relevant, other features, such as macrocycle and amidation, will also be listed.
No core peptides found.
c00001_HRGM_G.. - Region 3 - NRPS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key. More detailed help is available here.
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
Legend:
core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
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zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
ClusterBlast
KnownClusterBlast
SubClusterBlast
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details. A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows clusters from the antiSMASH database and other clusters of interest that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the antiSMASH database (if applicable).
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region. Click on an accession to open that entry in the MiBIG database.
Similar subclusters
Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship. Click on reference genes to show details of similarities to genes within the current region.
No matches found.
NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 3, location 1423118 - 1478613:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).
reset view
zoom to selection