HRGM_Genome_2166 - 19 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00001_HRGM_G.. (original name was: HRGM_Genome_2166_1) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	terpene	85,719	106,459

c00011_HRGM_G.. (original name was: HRGM_Genome_2166_11) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	NRPS,bacteriocin	1,521	53,312	bacillibactin	NRP	100%

c00012_HRGM_G.. (original name was: HRGM_Genome_2166_12) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	transAT-PKS-like	30,477	70,468	difficidin	Polyketide + NRP	40%

c00013_HRGM_G.. (original name was: HRGM_Genome_2166_13) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	PKS-like	11,963	53,207	butirosin A / butirosin B	Saccharide	7%

c00028_HRGM_G.. (original name was: HRGM_Genome_2166_28) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	bacteriocin	11,743	24,821

c00033_HRGM_G.. (original name was: HRGM_Genome_2166_33) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	thiopeptide,LAP	4,226	33,922

c00037_HRGM_G.. (original name was: HRGM_Genome_2166_37) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	NRPS	1	31,953	paenilarvins	NRP	75%

c00047_HRGM_G.. (original name was: HRGM_Genome_2166_47) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 47.1	NRPS,betalactone	1	26,413	fengycin	NRP	80%

c00060_HRGM_G.. (original name was: HRGM_Genome_2166_60) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 60.1	NRPS	1	21,955	fengycin	NRP	33%

c00069_HRGM_G.. (original name was: HRGM_Genome_2166_69) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 69.1	transAT-PKS-like	1	19,479	macrolactin H	Polyketide	30%

c00073_HRGM_G.. (original name was: HRGM_Genome_2166_73) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 73.1	NRPS-like	1	17,640	surfactin	NRP:Lipopeptide	30%

c00074_HRGM_G.. (original name was: HRGM_Genome_2166_74) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 74.1	terpene	6,188	17,450

c00076_HRGM_G.. (original name was: HRGM_Genome_2166_76) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 76.1	transAT-PKS-like	1	16,530	macrolactin H	Polyketide	20%

c00108_HRGM_G.. (original name was: HRGM_Genome_2166_108) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 108.1	NRPS,transAT-PKS-like	1	7,710	bacillaene	Polyketide + NRP	21%

c00113_HRGM_G.. (original name was: HRGM_Genome_2166_113) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 113.1	transAT-PKS-like	1	5,779

c00115_HRGM_G.. (original name was: HRGM_Genome_2166_115) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 115.1	transAT-PKS-like	1	5,708

c00118_HRGM_G.. (original name was: HRGM_Genome_2166_118) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 118.1	transAT-PKS-like	1	5,407	1-nonadecene / (14Z)-1,14-nonadecadiene	Polyketide:Modular type I	100%

c00140_HRGM_G.. (original name was: HRGM_Genome_2166_140) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 140.1	transAT-PKS-like	1	2,511	bacillaene	Polyketide + NRP	21%

c00150_HRGM_G.. (original name was: HRGM_Genome_2166_150) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 150.1	transAT-PKS-like	1	1,152	bacillaene	Polyketide + NRP	14%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	terpene	85,719	106,459
Region 11.1	NRPS,bacteriocin	1,521	53,312	bacillibactin	NRP	100%
Region 12.1	transAT-PKS-like	30,477	70,468	difficidin	Polyketide + NRP	40%
Region 13.1	PKS-like	11,963	53,207	butirosin A / butirosin B	Saccharide	7%
Region 28.1	bacteriocin	11,743	24,821
Region 33.1	thiopeptide,LAP	4,226	33,922
Region 37.1	NRPS	1	31,953	paenilarvins	NRP	75%
Region 47.1	NRPS,betalactone	1	26,413	fengycin	NRP	80%
Region 60.1	NRPS	1	21,955	fengycin	NRP	33%
Region 69.1	transAT-PKS-like	1	19,479	macrolactin H	Polyketide	30%
Region 73.1	NRPS-like	1	17,640	surfactin	NRP:Lipopeptide	30%
Region 74.1	terpene	6,188	17,450
Region 76.1	transAT-PKS-like	1	16,530	macrolactin H	Polyketide	20%
Region 108.1	NRPS,transAT-PKS-like	1	7,710	bacillaene	Polyketide + NRP	21%
Region 113.1	transAT-PKS-like	1	5,779
Region 115.1	transAT-PKS-like	1	5,708
Region 118.1	transAT-PKS-like	1	5,407	1-nonadecene / (14Z)-1,14-nonadecadiene	Polyketide:Modular type I	100%
Region 140.1	transAT-PKS-like	1	2,511	bacillaene	Polyketide + NRP	21%
Region 150.1	transAT-PKS-like	1	1,152	bacillaene	Polyketide + NRP	14%

No secondary metabolite regions were found in these records:: c00002_HRGM_G.. (original name was: HRGM_Genome_2166_2) (Genus species); c00003_HRGM_G.. (original name was: HRGM_Genome_2166_3) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_2166_4) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_2166_5) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_2166_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_2166_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_2166_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_2166_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_2166_10) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_2166_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_2166_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_2166_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_2166_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_2166_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_2166_19) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_2166_20) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_2166_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_2166_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_2166_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_2166_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_2166_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_2166_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_2166_27) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_2166_29) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_2166_30) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_2166_31) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_2166_32) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_2166_34) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_2166_35) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_2166_36) (Genus species); c00038_HRGM_G.. (original name was: HRGM_Genome_2166_38) (Genus species); c00039_HRGM_G.. (original name was: HRGM_Genome_2166_39) (Genus species); c00040_HRGM_G.. (original name was: HRGM_Genome_2166_40) (Genus species); c00041_HRGM_G.. (original name was: HRGM_Genome_2166_41) (Genus species); c00042_HRGM_G.. (original name was: HRGM_Genome_2166_42) (Genus species); c00043_HRGM_G.. (original name was: HRGM_Genome_2166_43) (Genus species); c00044_HRGM_G.. (original name was: HRGM_Genome_2166_44) (Genus species); c00045_HRGM_G.. (original name was: HRGM_Genome_2166_45) (Genus species); c00046_HRGM_G.. (original name was: HRGM_Genome_2166_46) (Genus species); c00048_HRGM_G.. (original name was: HRGM_Genome_2166_48) (Genus species); c00049_HRGM_G.. (original name was: HRGM_Genome_2166_49) (Genus species); c00050_HRGM_G.. (original name was: HRGM_Genome_2166_50) (Genus species); c00051_HRGM_G.. (original name was: HRGM_Genome_2166_51) (Genus species); c00052_HRGM_G.. (original name was: HRGM_Genome_2166_52) (Genus species); c00053_HRGM_G.. (original name was: HRGM_Genome_2166_53) (Genus species); c00054_HRGM_G.. (original name was: HRGM_Genome_2166_54) (Genus species); c00055_HRGM_G.. (original name was: HRGM_Genome_2166_55) (Genus species); c00056_HRGM_G.. (original name was: HRGM_Genome_2166_56) (Genus species); c00057_HRGM_G.. (original name was: HRGM_Genome_2166_57) (Genus species); c00058_HRGM_G.. (original name was: HRGM_Genome_2166_58) (Genus species); c00059_HRGM_G.. (original name was: HRGM_Genome_2166_59) (Genus species); c00061_HRGM_G.. (original name was: HRGM_Genome_2166_61) (Genus species); c00062_HRGM_G.. (original name was: HRGM_Genome_2166_62) (Genus species); c00063_HRGM_G.. (original name was: HRGM_Genome_2166_63) (Genus species); c00064_HRGM_G.. (original name was: HRGM_Genome_2166_64) (Genus species); c00065_HRGM_G.. (original name was: HRGM_Genome_2166_65) (Genus species); c00066_HRGM_G.. (original name was: HRGM_Genome_2166_66) (Genus species); c00067_HRGM_G.. (original name was: HRGM_Genome_2166_67) (Genus species); c00068_HRGM_G.. (original name was: HRGM_Genome_2166_68) (Genus species); c00070_HRGM_G.. (original name was: HRGM_Genome_2166_70) (Genus species); c00071_HRGM_G.. (original name was: HRGM_Genome_2166_71) (Genus species); c00072_HRGM_G.. (original name was: HRGM_Genome_2166_72) (Genus species); c00075_HRGM_G.. (original name was: HRGM_Genome_2166_75) (Genus species); c00077_HRGM_G.. (original name was: HRGM_Genome_2166_77) (Genus species); c00078_HRGM_G.. (original name was: HRGM_Genome_2166_78) (Genus species); c00079_HRGM_G.. (original name was: HRGM_Genome_2166_79) (Genus species); c00080_HRGM_G.. (original name was: HRGM_Genome_2166_80) (Genus species); c00081_HRGM_G.. (original name was: HRGM_Genome_2166_81) (Genus species); c00082_HRGM_G.. (original name was: HRGM_Genome_2166_82) (Genus species); c00083_HRGM_G.. (original name was: HRGM_Genome_2166_83) (Genus species); c00084_HRGM_G.. (original name was: HRGM_Genome_2166_84) (Genus species); c00085_HRGM_G.. (original name was: HRGM_Genome_2166_85) (Genus species); c00086_HRGM_G.. (original name was: HRGM_Genome_2166_86) (Genus species); c00087_HRGM_G.. (original name was: HRGM_Genome_2166_87) (Genus species); c00088_HRGM_G.. (original name was: HRGM_Genome_2166_88) (Genus species); c00089_HRGM_G.. (original name was: HRGM_Genome_2166_89) (Genus species); c00090_HRGM_G.. (original name was: HRGM_Genome_2166_90) (Genus species); c00091_HRGM_G.. (original name was: HRGM_Genome_2166_91) (Genus species); c00092_HRGM_G.. (original name was: HRGM_Genome_2166_92) (Genus species); c00093_HRGM_G.. (original name was: HRGM_Genome_2166_93) (Genus species); c00094_HRGM_G.. (original name was: HRGM_Genome_2166_94) (Genus species); c00095_HRGM_G.. (original name was: HRGM_Genome_2166_95) (Genus species); c00096_HRGM_G.. (original name was: HRGM_Genome_2166_96) (Genus species); c00097_HRGM_G.. (original name was: HRGM_Genome_2166_97) (Genus species); c00098_HRGM_G.. (original name was: HRGM_Genome_2166_98) (Genus species); c00099_HRGM_G.. (original name was: HRGM_Genome_2166_99) (Genus species); c00100_HRGM_G.. (original name was: HRGM_Genome_2166_100) (Genus species); c00101_HRGM_G.. (original name was: HRGM_Genome_2166_101) (Genus species); c00102_HRGM_G.. (original name was: HRGM_Genome_2166_102) (Genus species); c00103_HRGM_G.. (original name was: HRGM_Genome_2166_103) (Genus species); c00104_HRGM_G.. (original name was: HRGM_Genome_2166_104) (Genus species); c00105_HRGM_G.. (original name was: HRGM_Genome_2166_105) (Genus species); c00106_HRGM_G.. (original name was: HRGM_Genome_2166_106) (Genus species); c00107_HRGM_G.. (original name was: HRGM_Genome_2166_107) (Genus species); c00109_HRGM_G.. (original name was: HRGM_Genome_2166_109) (Genus species); c00110_HRGM_G.. (original name was: HRGM_Genome_2166_110) (Genus species); c00111_HRGM_G.. (original name was: HRGM_Genome_2166_111) (Genus species); c00112_HRGM_G.. (original name was: HRGM_Genome_2166_112) (Genus species); c00114_HRGM_G.. (original name was: HRGM_Genome_2166_114) (Genus species); c00116_HRGM_G.. (original name was: HRGM_Genome_2166_116) (Genus species); c00117_HRGM_G.. (original name was: HRGM_Genome_2166_117) (Genus species); c00119_HRGM_G.. (original name was: HRGM_Genome_2166_119) (Genus species); c00120_HRGM_G.. (original name was: HRGM_Genome_2166_120) (Genus species); c00121_HRGM_G.. (original name was: HRGM_Genome_2166_121) (Genus species); c00122_HRGM_G.. (original name was: HRGM_Genome_2166_122) (Genus species); c00123_HRGM_G.. (original name was: HRGM_Genome_2166_123) (Genus species); c00124_HRGM_G.. (original name was: HRGM_Genome_2166_124) (Genus species); c00125_HRGM_G.. (original name was: HRGM_Genome_2166_125) (Genus species); c00126_HRGM_G.. (original name was: HRGM_Genome_2166_126) (Genus species); c00127_HRGM_G.. (original name was: HRGM_Genome_2166_127) (Genus species); c00128_HRGM_G.. (original name was: HRGM_Genome_2166_128) (Genus species); c00129_HRGM_G.. (original name was: HRGM_Genome_2166_129) (Genus species); c00130_HRGM_G.. (original name was: HRGM_Genome_2166_130) (Genus species); c00131_HRGM_G.. (original name was: HRGM_Genome_2166_131) (Genus species); c00132_HRGM_G.. (original name was: HRGM_Genome_2166_132) (Genus species); c00133_HRGM_G.. (original name was: HRGM_Genome_2166_133) (Genus species); c00134_HRGM_G.. (original name was: HRGM_Genome_2166_134) (Genus species); c00135_HRGM_G.. (original name was: HRGM_Genome_2166_135) (Genus species); c00136_HRGM_G.. (original name was: HRGM_Genome_2166_136) (Genus species); c00137_HRGM_G.. (original name was: HRGM_Genome_2166_137) (Genus species); c00138_HRGM_G.. (original name was: HRGM_Genome_2166_138) (Genus species); c00139_HRGM_G.. (original name was: HRGM_Genome_2166_139) (Genus species); c00141_HRGM_G.. (original name was: HRGM_Genome_2166_141) (Genus species); c00142_HRGM_G.. (original name was: HRGM_Genome_2166_142) (Genus species); c00143_HRGM_G.. (original name was: HRGM_Genome_2166_143) (Genus species); c00144_HRGM_G.. (original name was: HRGM_Genome_2166_144) (Genus species); c00145_HRGM_G.. (original name was: HRGM_Genome_2166_145) (Genus species); c00146_HRGM_G.. (original name was: HRGM_Genome_2166_146) (Genus species); c00147_HRGM_G.. (original name was: HRGM_Genome_2166_147) (Genus species); c00148_HRGM_G.. (original name was: HRGM_Genome_2166_148) (Genus species); c00149_HRGM_G.. (original name was: HRGM_Genome_2166_149) (Genus species)

Compact view

c00001_HRGM_G.. - Region 1 - terpene

Download region GenBank file

Location: 85,719 - 106,459 nt. (total: 20,741 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00011_HRGM_G.. - Region 1 - NRPS,bacteriocin

Download region GenBank file

Location: 1,521 - 53,312 nt. (total: 51,792 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 1520 - 53312:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - thr)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 1520 - 51233:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_2166_CDS_01000

Search NORINE for peptide: strict or relaxed

AMP-binding (456..855): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

AMP-binding (1513..1929): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

HRGM_Genome_2166_CDS_01002

Search NORINE for peptide: strict or relaxed

AMP-binding (31..435): dhb

NRPSPredictor2: dhb

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: PLPAQGVVNK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 100% (strong)

c00012_HRGM_G.. - Region 1 - transAT-PKS-like

Download region GenBank file

Location: 30,477 - 70,468 nt. (total: 39,992 nt) Show pHMM detection rules used

Region on contig edge.

transAT-PKS-like: cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS) and not PKS_AT)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 30476 - 70468:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal) + (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

c00013_HRGM_G.. - Region 1 - PKS-like

Download region GenBank file

Location: 11,963 - 53,207 nt. (total: 41,245 nt) Show pHMM detection rules used

PKS-like: (t2pks2 or ksIII)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

c00028_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 11,743 - 24,821 nt. (total: 13,079 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00033_HRGM_G.. - Region 1 - LAP,thiopeptide

Download region GenBank file

Location: 4,226 - 33,922 nt. (total: 29,697 nt) Show pHMM detection rules used

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)
LAP: ((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Thiopeptides

ClusterBlast

KnownClusterBlast

SubClusterBlast

Thiopeptide predictions

No core peptides found.

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

Thiopeptides

Core peptide predictions

No core peptides found.

c00037_HRGM_G.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 31,953 nt. (total: 31,953 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 31953:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (asn) + (D-tyr - D-asn - pro - glu) + (D-ser - thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_2166_CDS_02351

Search NORINE for peptide: strict or relaxed

AMP-binding (267..674): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (1789..2188): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

HRGM_Genome_2166_CDS_02352

Search NORINE for peptide: strict or relaxed

AMP-binding (268..662): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DALSVGEVVK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

AMP-binding (1779..2174): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 100% (strong)

AMP-binding (3286..3683): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFIAHVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 100% (strong)

AMP-binding (4325..4732): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAKDLGVVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

HRGM_Genome_2166_CDS_02353

Search NORINE for peptide: strict or relaxed

AMP-binding (129..524): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 100% (strong)

c00047_HRGM_G.. - Region 1 - NRPS,betalactone

Download region GenBank file

Location: 1 - 26,413 nt. (total: 26,413 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 26413:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-tyr) + (ile)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_2166_CDS_02620

Search NORINE for peptide: strict or relaxed

AMP-binding (178..570): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DGTITAEVAK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

HRGM_Genome_2166_CDS_02621

Search NORINE for peptide: strict or relaxed

AMP-binding (473..866): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFYGITFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

HRGM_Genome_2166_CDS_02625

Search NORINE for peptide: strict or relaxed

AMP-binding (12..445): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gclhIAApvK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 40% (weak)

c00060_HRGM_G.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 21,955 nt. (total: 21,955 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 21955:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pro)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_2166_CDS_02926

Search NORINE for peptide: strict or relaxed

AMP-binding (1..398): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFIAHVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 100% (strong)

HRGM_Genome_2166_CDS_02943

Search NORINE for peptide: strict or relaxed

AMP-binding (179..349): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: ---------K
Nearest Stachelhaus code:: val
Stachelhaus code match:: 10% (weak)

c00069_HRGM_G.. - Region 1 - transAT-PKS-like

Download region GenBank file

Location: 1 - 19,479 nt. (total: 19,479 nt) Show pHMM detection rules used

Region on contig edge.

transAT-PKS-like: cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS) and not PKS_AT)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 19479:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

c00073_HRGM_G.. - Region 1 - NRPS-like

Download region GenBank file

Location: 1 - 17,640 nt. (total: 17,640 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 17640:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_2166_CDS_03210

Search NORINE for peptide: strict or relaxed

AMP-binding (176..574): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGCVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

c00074_HRGM_G.. - Region 1 - terpene

Download region GenBank file

Location: 6,188 - 17,450 nt. (total: 11,263 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00076_HRGM_G.. - Region 1 - transAT-PKS-like

Download region GenBank file

Location: 1 - 16,530 nt. (total: 16,530 nt) Show pHMM detection rules used

Region on contig edge.

transAT-PKS-like: cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS) and not PKS_AT)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

c00108_HRGM_G.. - Region 1 - NRPS,transAT-PKS-like

Download region GenBank file

Location: 1 - 7,710 nt. (total: 7,710 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
transAT-PKS-like: cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS) and not PKS_AT)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 7710:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_2166_CDS_03572

Search NORINE for peptide: strict or relaxed

AMP-binding (1..381): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

c00113_HRGM_G.. - Region 1 - transAT-PKS-like

Download region GenBank file

Location: 1 - 5,779 nt. (total: 5,779 nt) Show pHMM detection rules used

Region on contig edge.

transAT-PKS-like: cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS) and not PKS_AT)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 5779:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

c00115_HRGM_G.. - Region 1 - transAT-PKS-like

Download region GenBank file

Location: 1 - 5,708 nt. (total: 5,708 nt) Show pHMM detection rules used

Region on contig edge.

transAT-PKS-like: cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS) and not PKS_AT)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00118_HRGM_G.. - Region 1 - transAT-PKS-like

Download region GenBank file

Location: 1 - 5,407 nt. (total: 5,407 nt) Show pHMM detection rules used

Region on contig edge.

transAT-PKS-like: cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS) and not PKS_AT)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 5407:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

c00140_HRGM_G.. - Region 1 - transAT-PKS-like

Download region GenBank file

Location: 1 - 2,511 nt. (total: 2,511 nt) Show pHMM detection rules used

Region on contig edge.

transAT-PKS-like: cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS) and not PKS_AT)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

c00150_HRGM_G.. - Region 1 - transAT-PKS-like

Download region GenBank file

Location: 1 - 1,152 nt. (total: 1,152 nt) Show pHMM detection rules used

Region on contig edge.

transAT-PKS-like: cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS) and not PKS_AT)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.