HRGM_Genome_1832 - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00007_HRGM_G.. (original name was: HRGM_Genome_1832_16) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	bacteriocin	1,753	12,031

c00014_HRGM_G.. (original name was: HRGM_Genome_1832_26) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	sactipeptide	82,298	102,450

c00055_HRGM_G.. (original name was: HRGM_Genome_1832_69) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 55.1	NRPS,ladderane	13,584	76,221

Region	Type	From	To	Similarity
Region 7.1	bacteriocin	1,753	12,031
Region 14.1	sactipeptide	82,298	102,450
Region 55.1	NRPS,ladderane	13,584	76,221

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_1832_4) (Genus species); c00002_HRGM_G.. (original name was: HRGM_Genome_1832_6) (Genus species); c00003_HRGM_G.. (original name was: HRGM_Genome_1832_8) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_1832_10) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_1832_12) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_1832_13) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_1832_18) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_1832_19) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_1832_20) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_1832_23) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_1832_24) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_1832_25) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_1832_27) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_1832_28) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_1832_29) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_1832_30) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_1832_31) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_1832_32) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_1832_33) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_1832_35) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_1832_36) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_1832_37) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_1832_38) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_1832_39) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_1832_40) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_1832_41) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_1832_42) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_1832_43) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_1832_44) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_1832_45) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_1832_46) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_1832_47) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_1832_48) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_1832_49) (Genus species); c00037_HRGM_G.. (original name was: HRGM_Genome_1832_50) (Genus species); c00038_HRGM_G.. (original name was: HRGM_Genome_1832_51) (Genus species); c00039_HRGM_G.. (original name was: HRGM_Genome_1832_52) (Genus species); c00040_HRGM_G.. (original name was: HRGM_Genome_1832_53) (Genus species); c00041_HRGM_G.. (original name was: HRGM_Genome_1832_54) (Genus species); c00042_HRGM_G.. (original name was: HRGM_Genome_1832_55) (Genus species); c00043_HRGM_G.. (original name was: HRGM_Genome_1832_56) (Genus species); c00044_HRGM_G.. (original name was: HRGM_Genome_1832_57) (Genus species); c00045_HRGM_G.. (original name was: HRGM_Genome_1832_58) (Genus species); c00046_HRGM_G.. (original name was: HRGM_Genome_1832_60) (Genus species); c00047_HRGM_G.. (original name was: HRGM_Genome_1832_61) (Genus species); c00048_HRGM_G.. (original name was: HRGM_Genome_1832_62) (Genus species); c00049_HRGM_G.. (original name was: HRGM_Genome_1832_63) (Genus species); c00050_HRGM_G.. (original name was: HRGM_Genome_1832_64) (Genus species); c00051_HRGM_G.. (original name was: HRGM_Genome_1832_65) (Genus species); c00052_HRGM_G.. (original name was: HRGM_Genome_1832_66) (Genus species); c00053_HRGM_G.. (original name was: HRGM_Genome_1832_67) (Genus species); c00054_HRGM_G.. (original name was: HRGM_Genome_1832_68) (Genus species); c00056_HRGM_G.. (original name was: HRGM_Genome_1832_70) (Genus species); c00057_HRGM_G.. (original name was: HRGM_Genome_1832_71) (Genus species); c00058_HRGM_G.. (original name was: HRGM_Genome_1832_72) (Genus species); c00059_HRGM_G.. (original name was: HRGM_Genome_1832_73) (Genus species); c00060_HRGM_G.. (original name was: HRGM_Genome_1832_74) (Genus species)

Compact view

c00007_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 1,753 - 12,031 nt. (total: 10,279 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00014_HRGM_G.. - Region 1 - sactipeptide

Download region GenBank file

Location: 82,298 - 102,450 nt. (total: 20,153 nt) Show pHMM detection rules used

sactipeptide: (subtilosin or thuricin or TIGR04404 or TIGR03973)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Sactipeptides

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

Sactipeptide predictions

Sactipeptides - No core peptides found.

Sactipeptides

Core peptide predictions

No core peptides found.

c00055_HRGM_G.. - Region 1 - NRPS,ladderane

Download region GenBank file

Location: 13,584 - 76,221 nt. (total: 62,638 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
ladderane: ladderane

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 13583 - 76221:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 13583 - 60915:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_1832_CDS_01419

Search NORINE for peptide: strict or relaxed

AMP-binding (457..845): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAsFLGgVyK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 70% (weak)

AMP-binding (1479..1869): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DMKnLGtVsK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 70% (weak)