HRGM_Genome_1680 - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00003_HRGM_G.. (original name was: HRGM_Genome_1680_3) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	terpene	82,072	102,950

c00004_HRGM_G.. (original name was: HRGM_Genome_1680_4) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	bacteriocin	202,981	213,793

c00020_HRGM_G.. (original name was: HRGM_Genome_1680_20) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	bacteriocin	33,703	45,761

Region	Type	From	To	Similarity
Region 3.1	terpene	82,072	102,950
Region 4.1	bacteriocin	202,981	213,793
Region 20.1	bacteriocin	33,703	45,761

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_1680_1) (Genus species); c00002_HRGM_G.. (original name was: HRGM_Genome_1680_2) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_1680_5) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_1680_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_1680_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_1680_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_1680_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_1680_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_1680_11) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_1680_12) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_1680_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_1680_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_1680_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_1680_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_1680_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_1680_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_1680_19) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_1680_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_1680_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_1680_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_1680_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_1680_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_1680_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_1680_27) (Genus species)

Compact view

c00003_HRGM_G.. - Region 1 - terpene

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Location: 82,072 - 102,950 nt. (total: 20,879 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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ClusterBlast

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Similar known gene clusters

No matches found.

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No matches found.

c00004_HRGM_G.. - Region 1 - bacteriocin

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Location: 202,981 - 213,793 nt. (total: 10,813 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

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Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00020_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 33,703 - 45,761 nt. (total: 12,059 nt) Show pHMM detection rules used

Region on contig edge.

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.