HRGM_Genome_1585 - 1 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00003_HRGM_G.. (original name was: HRGM_Genome_1585_3) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	NRPS	1	43,700

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	NRPS	1	43,700

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_1585_1) (Genus species); c00002_HRGM_G.. (original name was: HRGM_Genome_1585_2) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_1585_4) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_1585_5) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_1585_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_1585_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_1585_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_1585_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_1585_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_1585_11) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_1585_12) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_1585_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_1585_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_1585_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_1585_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_1585_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_1585_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_1585_19) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_1585_20) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_1585_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_1585_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_1585_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_1585_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_1585_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_1585_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_1585_27) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_1585_28) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_1585_29) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_1585_30) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_1585_31) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_1585_32) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_1585_33) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_1585_34) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_1585_35) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_1585_36) (Genus species); c00037_HRGM_G.. (original name was: HRGM_Genome_1585_37) (Genus species); c00038_HRGM_G.. (original name was: HRGM_Genome_1585_38) (Genus species); c00039_HRGM_G.. (original name was: HRGM_Genome_1585_39) (Genus species); c00040_HRGM_G.. (original name was: HRGM_Genome_1585_40) (Genus species); c00041_HRGM_G.. (original name was: HRGM_Genome_1585_41) (Genus species); c00042_HRGM_G.. (original name was: HRGM_Genome_1585_42) (Genus species); c00043_HRGM_G.. (original name was: HRGM_Genome_1585_43) (Genus species); c00044_HRGM_G.. (original name was: HRGM_Genome_1585_44) (Genus species); c00045_HRGM_G.. (original name was: HRGM_Genome_1585_45) (Genus species); c00046_HRGM_G.. (original name was: HRGM_Genome_1585_46) (Genus species); c00047_HRGM_G.. (original name was: HRGM_Genome_1585_47) (Genus species); c00048_HRGM_G.. (original name was: HRGM_Genome_1585_48) (Genus species); c00049_HRGM_G.. (original name was: HRGM_Genome_1585_49) (Genus species); c00050_HRGM_G.. (original name was: HRGM_Genome_1585_50) (Genus species); c00051_HRGM_G.. (original name was: HRGM_Genome_1585_51) (Genus species); c00052_HRGM_G.. (original name was: HRGM_Genome_1585_52) (Genus species); c00053_HRGM_G.. (original name was: HRGM_Genome_1585_53) (Genus species); c00054_HRGM_G.. (original name was: HRGM_Genome_1585_54) (Genus species); c00055_HRGM_G.. (original name was: HRGM_Genome_1585_55) (Genus species); c00056_HRGM_G.. (original name was: HRGM_Genome_1585_56) (Genus species); c00057_HRGM_G.. (original name was: HRGM_Genome_1585_57) (Genus species); c00058_HRGM_G.. (original name was: HRGM_Genome_1585_58) (Genus species); c00059_HRGM_G.. (original name was: HRGM_Genome_1585_59) (Genus species); c00060_HRGM_G.. (original name was: HRGM_Genome_1585_60) (Genus species); c00061_HRGM_G.. (original name was: HRGM_Genome_1585_61) (Genus species); c00062_HRGM_G.. (original name was: HRGM_Genome_1585_62) (Genus species); c00063_HRGM_G.. (original name was: HRGM_Genome_1585_63) (Genus species); c00064_HRGM_G.. (original name was: HRGM_Genome_1585_64) (Genus species); c00065_HRGM_G.. (original name was: HRGM_Genome_1585_65) (Genus species); c00066_HRGM_G.. (original name was: HRGM_Genome_1585_66) (Genus species); c00067_HRGM_G.. (original name was: HRGM_Genome_1585_67) (Genus species); c00068_HRGM_G.. (original name was: HRGM_Genome_1585_68) (Genus species); c00069_HRGM_G.. (original name was: HRGM_Genome_1585_69) (Genus species); c00070_HRGM_G.. (original name was: HRGM_Genome_1585_70) (Genus species); c00071_HRGM_G.. (original name was: HRGM_Genome_1585_71) (Genus species); c00072_HRGM_G.. (original name was: HRGM_Genome_1585_72) (Genus species); c00073_HRGM_G.. (original name was: HRGM_Genome_1585_73) (Genus species); c00074_HRGM_G.. (original name was: HRGM_Genome_1585_74) (Genus species); c00075_HRGM_G.. (original name was: HRGM_Genome_1585_75) (Genus species); c00076_HRGM_G.. (original name was: HRGM_Genome_1585_76) (Genus species); c00077_HRGM_G.. (original name was: HRGM_Genome_1585_77) (Genus species); c00078_HRGM_G.. (original name was: HRGM_Genome_1585_78) (Genus species); c00079_HRGM_G.. (original name was: HRGM_Genome_1585_79) (Genus species); c00080_HRGM_G.. (original name was: HRGM_Genome_1585_80) (Genus species); c00081_HRGM_G.. (original name was: HRGM_Genome_1585_81) (Genus species); c00082_HRGM_G.. (original name was: HRGM_Genome_1585_82) (Genus species); c00083_HRGM_G.. (original name was: HRGM_Genome_1585_83) (Genus species); c00084_HRGM_G.. (original name was: HRGM_Genome_1585_84) (Genus species); c00085_HRGM_G.. (original name was: HRGM_Genome_1585_85) (Genus species); c00086_HRGM_G.. (original name was: HRGM_Genome_1585_86) (Genus species); c00087_HRGM_G.. (original name was: HRGM_Genome_1585_87) (Genus species); c00088_HRGM_G.. (original name was: HRGM_Genome_1585_88) (Genus species); c00089_HRGM_G.. (original name was: HRGM_Genome_1585_89) (Genus species); c00090_HRGM_G.. (original name was: HRGM_Genome_1585_90) (Genus species); c00091_HRGM_G.. (original name was: HRGM_Genome_1585_91) (Genus species); c00092_HRGM_G.. (original name was: HRGM_Genome_1585_92) (Genus species); c00093_HRGM_G.. (original name was: HRGM_Genome_1585_93) (Genus species); c00094_HRGM_G.. (original name was: HRGM_Genome_1585_94) (Genus species); c00095_HRGM_G.. (original name was: HRGM_Genome_1585_95) (Genus species); c00096_HRGM_G.. (original name was: HRGM_Genome_1585_96) (Genus species); c00097_HRGM_G.. (original name was: HRGM_Genome_1585_97) (Genus species); c00098_HRGM_G.. (original name was: HRGM_Genome_1585_98) (Genus species); c00099_HRGM_G.. (original name was: HRGM_Genome_1585_99) (Genus species); c00100_HRGM_G.. (original name was: HRGM_Genome_1585_100) (Genus species); c00101_HRGM_G.. (original name was: HRGM_Genome_1585_101) (Genus species); c00102_HRGM_G.. (original name was: HRGM_Genome_1585_102) (Genus species); c00103_HRGM_G.. (original name was: HRGM_Genome_1585_103) (Genus species); c00104_HRGM_G.. (original name was: HRGM_Genome_1585_104) (Genus species); c00105_HRGM_G.. (original name was: HRGM_Genome_1585_105) (Genus species); c00106_HRGM_G.. (original name was: HRGM_Genome_1585_106) (Genus species); c00107_HRGM_G.. (original name was: HRGM_Genome_1585_107) (Genus species); c00108_HRGM_G.. (original name was: HRGM_Genome_1585_108) (Genus species); c00109_HRGM_G.. (original name was: HRGM_Genome_1585_109) (Genus species); c00110_HRGM_G.. (original name was: HRGM_Genome_1585_110) (Genus species); c00111_HRGM_G.. (original name was: HRGM_Genome_1585_111) (Genus species); c00112_HRGM_G.. (original name was: HRGM_Genome_1585_112) (Genus species); c00113_HRGM_G.. (original name was: HRGM_Genome_1585_113) (Genus species); c00114_HRGM_G.. (original name was: HRGM_Genome_1585_114) (Genus species); c00115_HRGM_G.. (original name was: HRGM_Genome_1585_115) (Genus species); c00116_HRGM_G.. (original name was: HRGM_Genome_1585_116) (Genus species); c00117_HRGM_G.. (original name was: HRGM_Genome_1585_117) (Genus species); c00118_HRGM_G.. (original name was: HRGM_Genome_1585_118) (Genus species); c00119_HRGM_G.. (original name was: HRGM_Genome_1585_119) (Genus species); c00120_HRGM_G.. (original name was: HRGM_Genome_1585_120) (Genus species); c00121_HRGM_G.. (original name was: HRGM_Genome_1585_121) (Genus species); c00122_HRGM_G.. (original name was: HRGM_Genome_1585_122) (Genus species); c00123_HRGM_G.. (original name was: HRGM_Genome_1585_123) (Genus species); c00124_HRGM_G.. (original name was: HRGM_Genome_1585_124) (Genus species); c00125_HRGM_G.. (original name was: HRGM_Genome_1585_125) (Genus species); c00126_HRGM_G.. (original name was: HRGM_Genome_1585_126) (Genus species); c00127_HRGM_G.. (original name was: HRGM_Genome_1585_127) (Genus species); c00128_HRGM_G.. (original name was: HRGM_Genome_1585_128) (Genus species); c00129_HRGM_G.. (original name was: HRGM_Genome_1585_129) (Genus species); c00130_HRGM_G.. (original name was: HRGM_Genome_1585_130) (Genus species); c00131_HRGM_G.. (original name was: HRGM_Genome_1585_131) (Genus species); c00132_HRGM_G.. (original name was: HRGM_Genome_1585_132) (Genus species); c00133_HRGM_G.. (original name was: HRGM_Genome_1585_133) (Genus species); c00134_HRGM_G.. (original name was: HRGM_Genome_1585_134) (Genus species); c00135_HRGM_G.. (original name was: HRGM_Genome_1585_135) (Genus species); c00136_HRGM_G.. (original name was: HRGM_Genome_1585_136) (Genus species); c00137_HRGM_G.. (original name was: HRGM_Genome_1585_137) (Genus species); c00138_HRGM_G.. (original name was: HRGM_Genome_1585_138) (Genus species); c00139_HRGM_G.. (original name was: HRGM_Genome_1585_139) (Genus species); c00140_HRGM_G.. (original name was: HRGM_Genome_1585_140) (Genus species); c00141_HRGM_G.. (original name was: HRGM_Genome_1585_141) (Genus species); c00142_HRGM_G.. (original name was: HRGM_Genome_1585_142) (Genus species); c00143_HRGM_G.. (original name was: HRGM_Genome_1585_143) (Genus species); c00144_HRGM_G.. (original name was: HRGM_Genome_1585_144) (Genus species); c00145_HRGM_G.. (original name was: HRGM_Genome_1585_145) (Genus species); c00146_HRGM_G.. (original name was: HRGM_Genome_1585_146) (Genus species); c00147_HRGM_G.. (original name was: HRGM_Genome_1585_147) (Genus species); c00148_HRGM_G.. (original name was: HRGM_Genome_1585_148) (Genus species); c00149_HRGM_G.. (original name was: HRGM_Genome_1585_149) (Genus species); c00150_HRGM_G.. (original name was: HRGM_Genome_1585_150) (Genus species); c00151_HRGM_G.. (original name was: HRGM_Genome_1585_151) (Genus species); c00152_HRGM_G.. (original name was: HRGM_Genome_1585_152) (Genus species); c00153_HRGM_G.. (original name was: HRGM_Genome_1585_153) (Genus species); c00154_HRGM_G.. (original name was: HRGM_Genome_1585_154) (Genus species); c00155_HRGM_G.. (original name was: HRGM_Genome_1585_155) (Genus species); c00156_HRGM_G.. (original name was: HRGM_Genome_1585_156) (Genus species); c00157_HRGM_G.. (original name was: HRGM_Genome_1585_157) (Genus species); c00158_HRGM_G.. (original name was: HRGM_Genome_1585_158) (Genus species); c00159_HRGM_G.. (original name was: HRGM_Genome_1585_159) (Genus species); c00160_HRGM_G.. (original name was: HRGM_Genome_1585_160) (Genus species); c00161_HRGM_G.. (original name was: HRGM_Genome_1585_161) (Genus species); c00162_HRGM_G.. (original name was: HRGM_Genome_1585_162) (Genus species); c00163_HRGM_G.. (original name was: HRGM_Genome_1585_163) (Genus species); c00164_HRGM_G.. (original name was: HRGM_Genome_1585_164) (Genus species); c00165_HRGM_G.. (original name was: HRGM_Genome_1585_165) (Genus species); c00166_HRGM_G.. (original name was: HRGM_Genome_1585_166) (Genus species); c00167_HRGM_G.. (original name was: HRGM_Genome_1585_167) (Genus species); c00168_HRGM_G.. (original name was: HRGM_Genome_1585_168) (Genus species); c00169_HRGM_G.. (original name was: HRGM_Genome_1585_169) (Genus species); c00170_HRGM_G.. (original name was: HRGM_Genome_1585_170) (Genus species); c00171_HRGM_G.. (original name was: HRGM_Genome_1585_171) (Genus species); c00172_HRGM_G.. (original name was: HRGM_Genome_1585_172) (Genus species); c00173_HRGM_G.. (original name was: HRGM_Genome_1585_173) (Genus species); c00174_HRGM_G.. (original name was: HRGM_Genome_1585_174) (Genus species); c00175_HRGM_G.. (original name was: HRGM_Genome_1585_175) (Genus species); c00176_HRGM_G.. (original name was: HRGM_Genome_1585_176) (Genus species); c00177_HRGM_G.. (original name was: HRGM_Genome_1585_177) (Genus species); c00178_HRGM_G.. (original name was: HRGM_Genome_1585_178) (Genus species); c00179_HRGM_G.. (original name was: HRGM_Genome_1585_179) (Genus species); c00180_HRGM_G.. (original name was: HRGM_Genome_1585_180) (Genus species); c00181_HRGM_G.. (original name was: HRGM_Genome_1585_181) (Genus species); c00182_HRGM_G.. (original name was: HRGM_Genome_1585_182) (Genus species); c00183_HRGM_G.. (original name was: HRGM_Genome_1585_183) (Genus species); c00184_HRGM_G.. (original name was: HRGM_Genome_1585_184) (Genus species); c00185_HRGM_G.. (original name was: HRGM_Genome_1585_185) (Genus species); c00186_HRGM_G.. (original name was: HRGM_Genome_1585_186) (Genus species); c00187_HRGM_G.. (original name was: HRGM_Genome_1585_187) (Genus species); c00188_HRGM_G.. (original name was: HRGM_Genome_1585_188) (Genus species); c00189_HRGM_G.. (original name was: HRGM_Genome_1585_189) (Genus species); c00190_HRGM_G.. (original name was: HRGM_Genome_1585_190) (Genus species); c00191_HRGM_G.. (original name was: HRGM_Genome_1585_191) (Genus species)

Compact view

c00003_HRGM_G.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 43,700 nt. (total: 43,700 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 43700:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal - mal) + (cys - cys - cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_1585_CDS_00192

Search NORINE for peptide: strict or relaxed

AMP-binding (16..388): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: aysFLAGylK
Nearest Stachelhaus code:: iva
Stachelhaus code match:: 50% (weak)

HRGM_Genome_1585_CDS_00195

Search NORINE for peptide: strict or relaxed

AMP-binding (37..414): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

AMP-binding (1074..1448): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

AMP-binding (2100..2323): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYN-----K
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 50% (weak)

HRGM_Genome_1585_CDS_00197

PKS_AT (6..286): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 79.2%; inactive: 70.8%; 2-Methylbutyryl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 77.6
Methoxymalonyl-CoA: 32.0
inactive: 28.2
Methylmalonyl-CoA: 27.5
fatty_acid: 18.9
Acetyl-CoA: 13.3
Propionyl-CoA: 1.0
trans-1,2-CPDA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

HRGM_Genome_1585_CDS_00198

CAL_domain (161..466): pk

minowa: fatty_acid

Prediction, score:

fatty_acid: 73.7
NH2: 8.2
shikimic_acid: 0.0
Acetyl-CoA: 0.0
AHBA: 0.0