HRGM_Genome_1541 - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00050_HRGM_G.. (original name was: HRGM_Genome_1541_54) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 50.1	bacteriocin	28,130	38,372
Region 50.2	sactipeptide	169,701	189,841

c00058_HRGM_G.. (original name was: HRGM_Genome_1541_62) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 58.1	NRPS	3,990	47,503	equibactin	NRP	14%

Region	Type	From	To	Most similar known cluster	Similarity
Region 50.1	bacteriocin	28,130	38,372
Region 50.2	sactipeptide	169,701	189,841
Region 58.1	NRPS	3,990	47,503	equibactin	NRP	14%

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_1541_1) (Genus species); c00002_HRGM_G.. (original name was: HRGM_Genome_1541_2) (Genus species); c00003_HRGM_G.. (original name was: HRGM_Genome_1541_3) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_1541_4) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_1541_5) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_1541_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_1541_8) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_1541_9) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_1541_10) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_1541_11) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_1541_12) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_1541_13) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_1541_14) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_1541_15) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_1541_16) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_1541_18) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_1541_19) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_1541_21) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_1541_22) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_1541_23) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_1541_24) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_1541_25) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_1541_26) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_1541_27) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_1541_28) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_1541_29) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_1541_30) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_1541_31) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_1541_32) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_1541_33) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_1541_34) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_1541_35) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_1541_36) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_1541_37) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_1541_39) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_1541_40) (Genus species); c00037_HRGM_G.. (original name was: HRGM_Genome_1541_41) (Genus species); c00038_HRGM_G.. (original name was: HRGM_Genome_1541_42) (Genus species); c00039_HRGM_G.. (original name was: HRGM_Genome_1541_43) (Genus species); c00040_HRGM_G.. (original name was: HRGM_Genome_1541_44) (Genus species); c00041_HRGM_G.. (original name was: HRGM_Genome_1541_45) (Genus species); c00042_HRGM_G.. (original name was: HRGM_Genome_1541_46) (Genus species); c00043_HRGM_G.. (original name was: HRGM_Genome_1541_47) (Genus species); c00044_HRGM_G.. (original name was: HRGM_Genome_1541_48) (Genus species); c00045_HRGM_G.. (original name was: HRGM_Genome_1541_49) (Genus species); c00046_HRGM_G.. (original name was: HRGM_Genome_1541_50) (Genus species); c00047_HRGM_G.. (original name was: HRGM_Genome_1541_51) (Genus species); c00048_HRGM_G.. (original name was: HRGM_Genome_1541_52) (Genus species); c00049_HRGM_G.. (original name was: HRGM_Genome_1541_53) (Genus species); c00051_HRGM_G.. (original name was: HRGM_Genome_1541_55) (Genus species); c00052_HRGM_G.. (original name was: HRGM_Genome_1541_56) (Genus species); c00053_HRGM_G.. (original name was: HRGM_Genome_1541_57) (Genus species); c00054_HRGM_G.. (original name was: HRGM_Genome_1541_58) (Genus species); c00055_HRGM_G.. (original name was: HRGM_Genome_1541_59) (Genus species); c00056_HRGM_G.. (original name was: HRGM_Genome_1541_60) (Genus species); c00057_HRGM_G.. (original name was: HRGM_Genome_1541_61) (Genus species); c00059_HRGM_G.. (original name was: HRGM_Genome_1541_63) (Genus species)

Compact view

c00050_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 28,130 - 38,372 nt. (total: 10,243 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00050_HRGM_G.. - Region 2 - sactipeptide

Download region GenBank file

Location: 169,701 - 189,841 nt. (total: 20,141 nt) Show pHMM detection rules used

sactipeptide: (subtilosin or thuricin or TIGR04404 or TIGR03973)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Sactipeptides

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

Sactipeptide predictions

Sactipeptides - No core peptides found.

Sactipeptides

Core peptide predictions

No core peptides found.

c00058_HRGM_G.. - Region 1 - NRPS

Download region GenBank file

Location: 3,990 - 47,503 nt. (total: 43,514 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 3989 - 47503:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_1541_CDS_04892

Search NORINE for peptide: strict or relaxed

AMP-binding (29..433): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: N/A
Small clusters prediction:: dhb, sal
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: PLPgQGiiCK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 70% (weak)

HRGM_Genome_1541_CDS_04893

Search NORINE for peptide: strict or relaxed

AMP-binding (566..1000): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNMSLiWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

HRGM_Genome_1541_CDS_04894

Search NORINE for peptide: strict or relaxed

AMP-binding (529..1053): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNfSMIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)