HRGM_Genome_1302 - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00002_HRGM_G.. (original name was: HRGM_Genome_1302_2) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	bacteriocin	9,447	19,854

c00005_HRGM_G.. (original name was: HRGM_Genome_1302_5) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	sactipeptide	14,364	34,510

c00014_HRGM_G.. (original name was: HRGM_Genome_1302_14) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	NRPS	1	33,221

Region	Type	From	To	Similarity
Region 2.1	bacteriocin	9,447	19,854
Region 5.1	sactipeptide	14,364	34,510
Region 14.1	NRPS	1	33,221

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_1302_1) (Genus species); c00003_HRGM_G.. (original name was: HRGM_Genome_1302_3) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_1302_4) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_1302_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_1302_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_1302_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_1302_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_1302_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_1302_11) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_1302_12) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_1302_13) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_1302_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_1302_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_1302_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_1302_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_1302_19) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_1302_20) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_1302_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_1302_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_1302_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_1302_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_1302_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_1302_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_1302_27) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_1302_28) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_1302_29) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_1302_30) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_1302_31) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_1302_32) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_1302_33) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_1302_34) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_1302_35) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_1302_36) (Genus species); c00037_HRGM_G.. (original name was: HRGM_Genome_1302_37) (Genus species); c00038_HRGM_G.. (original name was: HRGM_Genome_1302_38) (Genus species); c00039_HRGM_G.. (original name was: HRGM_Genome_1302_39) (Genus species); c00040_HRGM_G.. (original name was: HRGM_Genome_1302_40) (Genus species); c00041_HRGM_G.. (original name was: HRGM_Genome_1302_41) (Genus species); c00042_HRGM_G.. (original name was: HRGM_Genome_1302_42) (Genus species); c00043_HRGM_G.. (original name was: HRGM_Genome_1302_43) (Genus species); c00044_HRGM_G.. (original name was: HRGM_Genome_1302_44) (Genus species); c00045_HRGM_G.. (original name was: HRGM_Genome_1302_45) (Genus species); c00046_HRGM_G.. (original name was: HRGM_Genome_1302_46) (Genus species); c00047_HRGM_G.. (original name was: HRGM_Genome_1302_47) (Genus species); c00048_HRGM_G.. (original name was: HRGM_Genome_1302_48) (Genus species); c00049_HRGM_G.. (original name was: HRGM_Genome_1302_49) (Genus species); c00050_HRGM_G.. (original name was: HRGM_Genome_1302_50) (Genus species); c00051_HRGM_G.. (original name was: HRGM_Genome_1302_51) (Genus species); c00052_HRGM_G.. (original name was: HRGM_Genome_1302_52) (Genus species); c00053_HRGM_G.. (original name was: HRGM_Genome_1302_53) (Genus species); c00054_HRGM_G.. (original name was: HRGM_Genome_1302_54) (Genus species); c00055_HRGM_G.. (original name was: HRGM_Genome_1302_55) (Genus species); c00056_HRGM_G.. (original name was: HRGM_Genome_1302_56) (Genus species); c00057_HRGM_G.. (original name was: HRGM_Genome_1302_57) (Genus species); c00058_HRGM_G.. (original name was: HRGM_Genome_1302_58) (Genus species); c00059_HRGM_G.. (original name was: HRGM_Genome_1302_59) (Genus species); c00060_HRGM_G.. (original name was: HRGM_Genome_1302_60) (Genus species); c00061_HRGM_G.. (original name was: HRGM_Genome_1302_61) (Genus species); c00062_HRGM_G.. (original name was: HRGM_Genome_1302_62) (Genus species); c00063_HRGM_G.. (original name was: HRGM_Genome_1302_63) (Genus species); c00064_HRGM_G.. (original name was: HRGM_Genome_1302_64) (Genus species); c00065_HRGM_G.. (original name was: HRGM_Genome_1302_65) (Genus species); c00066_HRGM_G.. (original name was: HRGM_Genome_1302_66) (Genus species); c00067_HRGM_G.. (original name was: HRGM_Genome_1302_67) (Genus species); c00068_HRGM_G.. (original name was: HRGM_Genome_1302_68) (Genus species); c00069_HRGM_G.. (original name was: HRGM_Genome_1302_69) (Genus species); c00070_HRGM_G.. (original name was: HRGM_Genome_1302_70) (Genus species); c00071_HRGM_G.. (original name was: HRGM_Genome_1302_71) (Genus species); c00072_HRGM_G.. (original name was: HRGM_Genome_1302_72) (Genus species); c00073_HRGM_G.. (original name was: HRGM_Genome_1302_73) (Genus species)

Compact view

c00002_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 9,447 - 19,854 nt. (total: 10,408 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00005_HRGM_G.. - Region 1 - sactipeptide

Download region GenBank file

Location: 14,364 - 34,510 nt. (total: 20,147 nt) Show pHMM detection rules used

sactipeptide: (subtilosin or thuricin or TIGR04404 or TIGR03973)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Sactipeptides

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

Sactipeptide predictions

Sactipeptides - No core peptides found.

Sactipeptides

Core peptide predictions

No core peptides found.

c00014_HRGM_G.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 33,221 nt. (total: 33,221 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 33221:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_1302_CDS_00468

Search NORINE for peptide: strict or relaxed

AMP-binding (443..831): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAfLtGAIlK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 70% (weak)

AMP-binding (1455..1853): X

NRPSPredictor2: orn, lys, arg

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVikIGSVtK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 70% (weak)