Taxonomy_Profiling/
: Resources for performing taxonomic profiling using HRGMv2 species

- 16S_rRNA/

: Predicted 16S rRNA sequences and summary statistics generated by Barrnap for HRGMv2 species

- HRGMv2_kraken2_customdb/

: Custom taxonomy databases compatible with Kraken2 and Bracken  
    - HRGMv2_Concat/ : Database built using concatenated sequences per species  
    - HRGMv2_Rep/    : Database built using a single representative sequence per species
(Usage) kraken2 commands with "--db HRGMv2_Concat or HRGMv2_Rep (downloaded database folder)"

- HRGMv2_metaphlan_customdb/

: MetaPhlAn4-compatible custom database for HRGMv2 species  
    - HRGMv2_MetaPhlAn4_DB/ : Indexed Bowtie2 database folder for MetaPhlAn4 analysis  
(Usage) metaphlan commands with  "--bowtie2db HRGMv2_MetaPhlAn4_DB (downloaded database folder) --index HRGMv2_MetaPhlAn4_DB"